Lonsdalea populi: I6N93_04270
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Entry
I6N93_04270 CDS
T06954
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
lpop
Lonsdalea populi
Pathway
lpop03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lpop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
I6N93_04270 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpop03400
]
I6N93_04270 (recD)
Enzymes [BR:
lpop01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
I6N93_04270 (recD)
DNA repair and recombination proteins [BR:
lpop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
I6N93_04270 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
NAT10_TcmA_helicase
Viral_helicase1
AAA_11
SH3_13
UvrD-helicase
AAA_22
SLFN-g3_helicase
AAA_16
nSTAND3
DEAD
AAA_28
Herpes_Helicase
UvrD_C
PhoH
CbiA
T2SSE
MukB
TrwB_AAD_bind
DUF87
ATPase
Motif
Other DBs
NCBI-ProteinID:
QPQ25800
LinkDB
All DBs
Position
953780..955633
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AA seq
617 aa
AA seq
DB search
MIDLLEEARQRRWLRPLDVQFARMLAEDDQPHLLLAAACLSAYAGAGHVCLPLSQLHPNA
LFDGRDRALAQDIWQRLGRPDEAEWRQHLSNDPAVGEGEDPTPLVFQQDNLYLQRSWQGE
CRVAQFIAGNRAEPVYDEARIRAVLDDLFPAVEGEADWQKIAAAVALTRRIAVISGGPGT
GKTTTVARLLAALIELQDGPSPRIELAAPTGKAAARLTESLGSVLSQLPLSDAQRQAFPQ
EATTLHRLLGAVPDSQRLRYHQDNPLHLDVLVVDEASMVDLPMMANLIAALPPQARIILL
GDRDQLASVEAGAVLGDVCRFAEQGYSRRRSQQLNRLTGCTLEPGTAENASVTDSICLLR
KSYRFTADSGIGQLAKAVNRGDEAQLLAVLQQGYGDIACLPLADNSDYQRLLDQAVEGYT
DYLQRIASGDAPEQVLHAFQRYRQLCALREGPFGVSGLNQRIERALQAAGLIQRPALNGG
RWYVGRPVMIERNDAVLGLFNGDIGISMTNDQGELRVYFQLPDGRTKSVAPSRLPPHETA
YAMTVHKSQGSEFEHTALALPNHFLPVLTRELVYTAITRARKRLSLYSDRALLCRAVSTP
TQRYSGLEARIRSLMAE
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgattgatctattggaagaagcccgtcagcggcgatggttgcgtccgctggacgtgcag
tttgcccggatgctggcggaagacgaccagccgcatctcctgctggcggcggcgtgcctc
agcgcctacgccggtgcggggcacgtttgcctgccgttgtcacagcttcatcccaacgcg
ctatttgacgggcgggatcgggcgctggctcaggacatctggcagcggttgggaaggccg
gatgaagctgaatggcggcagcatttgtcgaacgacccagccgtcggcgagggtgaagat
cccaccccgctggtttttcagcaggacaatctgtacttgcagcgcagttggcagggagag
tgccgcgtcgcgcagtttatcgccggcaatcgtgccgagcctgtctatgacgaagcccgt
atccgtgcggtgttggatgacctgtttcctgcggttgagggcgaagccgactggcaaaag
atcgccgcggcggtcgcgttgacccgcaggattgcggtgatttccggggggccgggcaca
ggtaaaacgacgacggtcgccagactgctggcggccctgatagagctgcaggatgggccg
tcgccgcgtattgagctggctgcgccgacaggaaaggccgccgcccgtctcaccgagtct
ttgggcagcgtgttgagtcaactgccgctcagcgacgcgcagcggcaggctttcccgcag
gaggccaccacgctgcatcgcctgctgggcgcggtgccggacagccagcgcctgcgctac
catcaggataatccgctgcacttggatgtactggtggtggacgaagcctcaatggtcgat
cttccgatgatggcgaatctgatagccgcgctgccgccgcaggcccgcatcatactgtta
ggcgaccgcgaccagctggcttcggtcgaggccggggcggtgctgggcgacgtctgccgt
ttcgccgaacaggggtacagtaggaggcggagtcagcagttgaaccgtctcaccggctgc
acgctggaaccgggcacggcggaaaacgcctcggtgaccgacagtatttgtctgttgcgc
aagagttaccgtttcactgcggactcgggcataggacagctggcgaaggcggtaaatcgg
ggcgacgaggcgcagctgctggccgttttgcaacagggctatggcgatatcgcgtgtctg
ccgctggcggataattcagattatcagcgcctgctggatcaggcggtggaaggatacacg
gattatctccaacgtatcgccagcggtgacgctccggaacaagtattacacgcctttcaa
cgttaccgacaactgtgcgcgctaagagaggggccgtttggcgtttccggactgaatcag
cggattgaacgcgcgttgcaggcggcgggattgattcaacgacccgcgctcaacggcggg
cgctggtatgtcggccgcccggtgatgattgagcgcaacgacgccgtgctggggctattc
aacggcgacatcggcattagtatgacaaacgatcagggtgagctccgtgtctatttccaa
ctgccggatggtcgaaccaaatcggtcgctcccagccggctgccgccgcatgaaacggcc
tatgccatgaccgtgcataagtctcagggctctgagttcgaacacacggcgttggcgctg
ccgaatcactttctgcctgttctgacgcgggaattggtgtacaccgcgatcactcgcgcc
cggaagcggctgtcgctatacagcgatagggcattactgtgccgggcggtgagcacgccg
acgcagcgctatagcggactcgaggcgcgtattcgatccttgatggcggagtag
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