Lonsdalea populi: I6N93_04465
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Entry
I6N93_04465 CDS
T06954
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lpop
Lonsdalea populi
Pathway
lpop03030
DNA replication
lpop03430
Mismatch repair
lpop03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lpop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I6N93_04465 (dnaE)
03430 Mismatch repair
I6N93_04465 (dnaE)
03440 Homologous recombination
I6N93_04465 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpop03032
]
I6N93_04465 (dnaE)
03400 DNA repair and recombination proteins [BR:
lpop03400
]
I6N93_04465 (dnaE)
Enzymes [BR:
lpop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
I6N93_04465 (dnaE)
DNA replication proteins [BR:
lpop03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
I6N93_04465 (dnaE)
DNA repair and recombination proteins [BR:
lpop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
I6N93_04465 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QPQ25052
LinkDB
All DBs
Position
992010..995492
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFVHLRVHSDYSMIDGLAKVGPLVKKAASMGMPALAITDHSNLCGLVKFYGGAHGA
GVKPIVGADFYLQSEELADELAHLTILAMNNAGYQNLTLLISRAYQRGYGAAGPTIDRDW
LVEHQEGLLLLSGGRQGDIGKFLLRGNDALVEQCLAFYQEHFPQRYYLELIRTGRSDEES
YLHAAVALATQHGLPVVATNDVRFINADEFDAHEIRVAIHDGYTLDDPKRPRNYSPQQYM
RSEEEMCGLFADVPEALANSVEIAKRCNVTIRLGEYFLPQFPTGDMSTEDYLVMRSREGL
EERLAFLFPDEEERIQRRQVYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNDVPVGP
GRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIDHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LGEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDPEGQHPVTQ
FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINPRQEKHGLPPVDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSVFKAGSEKMGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTDKIVGLVDECWRMELKILPPDINSGLYHFHVNDAGEIVYGIGAIKG
VGEGPIEAIIEARNQGGYFRDLFDLCARADIKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLQDAMKSAEQHAKAEATGQVDMFGVLAETHEQVEQSYSTVAPWPEQVVLDGERETLGLY
LTGHPINQYLKEIERYAAGVRLKDMRPTDRGKITTAVGLVLSARVMVTKRGNRIGLCTLD
DRSGRLEVMLFTDALDKYQHLLEQDRILIVSGQVSFDDFSGGLKMTAREILDISEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQREDARARLRFGAAWRVTPTD
VLLNDLRTVVGNEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaccacgttttgttcacctgcgtgttcacagtgactattccatgatcgatggg
ctggctaaggtcggaccgttggtgaaaaaagcggcgtcgatgggcatgcctgcgctggcg
atcaccgaccactccaacctgtgcggtctggtgaaattttacggcggcgcgcatggcgct
ggcgtcaagccgatcgtcggcgcggatttttatcttcagagcgaggagctggccgacgaa
ctggcgcacctcactattctggcgatgaacaacgccggctaccagaatctgacgctgctg
atctcccgcgcctaccagcgcggctatggcgctgctggcccgacgatagatcgcgactgg
ctggtggaacatcaggaaggcctgctgttgctgtccggcggtcgtcagggtgatatcggc
aaattcctgcttcgtggcaatgacgcgttagtggaacagtgtctggctttttatcaggaa
catttcccgcagcgttactatctggagctgattcgtaccggtcggtcggatgaagaaagc
tatctgcatgcggcggtagcgctggcgacccagcacggcctgccggtcgtcgcgaccaac
gacgtgcgtttcatcaacgccgacgaattcgacgcccacgaaattcgcgtcgcgatccac
gacggctacacgctggacgatcccaagcggccgcgcaactacagtcctcagcagtacatg
cgcagcgaagaggaaatgtgcgggctgtttgccgacgttcctgaagcgctggccaacagc
gttgaaatcgccaagcgctgcaacgtgacgatacggctgggtgaatatttcctgccgcag
ttccccaccggcgatatgtcgacggaagattatttggtcatgcgttcccgggagggactg
gaggaacgtcttgctttcctgttccccgatgaagaagagcgcatccagcggcggcaggtc
tatgacgagcgtctcgatattgagttgcaggtcatcaaccagatgggattccccggctac
tttctgatcgtaatggaatttatccagtggtcgaaagataacgacgtgcccgtcgggccg
ggacgaggttccggcgccgggtcgcttgtcgcctatgcgctgaaaatcaccgatctcgat
ccgttggcctttgacctgctgttcgaacgattcctgaacccggaacgtgtgtccatgccc
gacttcgacgtcgacttctgcatggaaaaacgcgatctggttattgaccacgtggcggat
atgtacggccgcgatgcggtatcgcagattatcacattcggtacgatggcggcgaaggcg
gtgatccgagacgtggggcgcgtgctgggccatccttacggatttgttgatcgcatctcc
aagctggtgccgcccgatccgggaatgacgctggaaaaagcgttcgccgcggagccgcag
ctgggcgaaatctatgaggcggatgaagaagtcaaagcgctgatcgacatggcgcgcaaa
ctcgaaggggttacccgtaacgccggtaaacacgccgggggcgtggtgatttcaccgacc
aaaattaccgacttcgcgccgctgtattgcgacccggaggggcagcacccggtcacccag
ttcgacaagagcgatgtggagtacgccgggctggtgaagttcgacttccttggtttgcgc
acgttgaccatcatcaactgggcgctggaaatgatcaacccgcgccaggaaaagcacggg
ttgccgccggtcgatattgccgccattccgctcgacgacaagaaaagtttcgacatgctg
cagcggtcggaaaccaccgcggtgttccagttggaatcccgtggcatgaaggacttgatc
aaacgtctgaaacccgactgctttgaggacatgatcgcgctggtggccctgttccgtcca
ggcccgttgcagtcaggaatggtcgataactttatcgaccgtaaacacggccgggaggcc
atctcttatccggatatcgagtggcagcacgagtcgctgaaaccggtgctggaaccgacc
tatggtatcatcctgtatcaggaacaggtgatgcagatcgcgcaggtgctctccggctat
acgcttgggggcgcggatatgctgcgtcgcgctatgggtaagaaaaagcccgaagagatg
gccaagcaacgctcagtttttaaagccggttcagagaagatgggcatcgacggagaactg
tcgatgaagatcttcgacctggtggagaaattcgccggttacggcttcaataagtcgcac
tcggccgcctatgcgctggtgtcttaccagacgttatggttgaaggcgcattacccggcg
gaattcatggcggcggtcatgacggcggatatggataacaccgacaagatcgtcggactg
gtggatgaatgctggcgtatggagctcaaaatcctgccgccggatatcaacagcggtctg
taccacttccacgtcaacgacgccggtgagattgtgtatggcatcggcgcaatcaaaggc
gtgggcgaagggccgattgaggctatcatcgaagcccgtaatcagggcggttattttcgc
gatctgttcgacctttgcgcgcgcgcggacatcaaaaagctcaaccgccgcgtgctggaa
aagttgatcatgtccggcgcgttcgaccgtcttggcccgcatcgcgcggcgctgatgaac
tcactgcaggatgcgatgaaatcggccgaacaacatgccaaagcggaggctaccggtcag
gtggacatgttcggcgtgctggcggaaacgcatgagcaggtcgagcagtcctacagcacg
gttgccccctggccggaacaggtcgtattggacggtgagcgggaaacgctgggactgtat
ttgaccggccatcccatcaaccaatatctgaaggaaatcgaacgttatgccgccggcgtg
cgtttgaaagatatgcgcccaacggatcggggaaaaatcaccactgcggtgggtctggtg
ctttccgcccgcgttatggtgaccaaacgaggcaaccgcatcggtttgtgtactctggac
gatcgctccggtcgtctggaggtgatgttattcaccgatgcattggataaataccagcat
ttgctggagcaagaccgtattttgatcgtcagtggacaggtcagttttgatgatttcagc
ggtgggcttaaaatgaccgctcgcgagattttggatatcagcgaagcgcgggaaaaatat
gcgcgtggacttgctatctcgctgactgacaggcaaattgatgaccagttgttaaaccgt
ctccgtcagtcgttggaaccccatcgatcagggacgattccggtgcatctttattaccag
agggaggatgcgcgagctcggctacgcttcggcgcagcatggcgcgtgaccccgaccgac
gtgctcctgaacgatctgcgcaccgtagtgggtaatgaacaggtagaactggaatttgac
taa
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