Lonsdalea populi: I6N93_04570
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Entry
I6N93_04570 CDS
T06954
Name
(GenBank) exonuclease subunit SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
lpop
Lonsdalea populi
Brite
KEGG Orthology (KO) [BR:
lpop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpop03400
]
I6N93_04570
DNA repair and recombination proteins [BR:
lpop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
I6N93_04570
Archaeal homologous recombinant proteins
I6N93_04570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
AAA_21
ABC_tran
cobW
nSTAND3
NTPase_1
AAA_22
AAA_19
GTP_EFTU
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QPQ25070
LinkDB
All DBs
Position
complement(1020518..1024201)
Genome browser
AA seq
1227 aa
AA seq
DB search
MKILSLRLKNLNSLQGEWKIDFTREPFVSNGLFAITGPTGAGKTTLLDAICLALYHQTPR
LKVSPSQNELMTRHTAECLAEVEFEVKGTAYRAFWSQRRARNAPDGNLQAPKVELACCAD
GKIITDKVSDKLATIAQITGLDFDRFTKSMMLSQGQFAAFLNAEASKRAELLEELTGTDI
YGRISERVFEQHKAAQSALEQLQAQAGGIECLSSERRAELEQQLSELQLQEQDNTRHRDD
IATHQRWFETLQEHQRALISSEEKQRSLQLDRVQAKPQLARLEASIPAEKLRPIYSERQR
YAQEKTLLANLVAKLDLQMTQQQSTLAQLQTQKENAAARQQHHAEERQRQETIINEQVQP
LDQRIATLREQRDQQQQSQDQQKQLQKDLIEKQSTLRQEREQVKARLAQIAEFRQQHSVY
QYWGSHIPLWEAQFPQLQALQRELKTQQAKAAEQQVRADYCQQQRATLLEKQQAQRKTTE
GIQRNDEQLQQRLHERETAQPTDGLRQQLSDLADQRHERQRFAARVTELQSLLSQHTLLE
SQLLDDGHRIQQLERELEQQRREHHLRVGHFDDLDKRHELELRIANLESERKQLQPGKEC
PLCGSTHHPAIERYQSLRPSETQLRLHALRQEVEALQAKVVQTSTQLHLLQQQRQQMQLR
LDKISDEITTLRQECQSVSERLHIDFDFNQPEAFVHWQAQCDEQEKALQSQLAEREQTRR
QIQDSKDLLTSAQQSLQQTEQQLALNAQQREALTQSREELRLAQEKTEQELARLHNALSH
KLAELHLVAPADAQQEDWLNLRRREWQRWQENEHEQHLCEPRLSALSTGTEHTQQRLKET
ETALAMLQQQLKATRQSLETAQQSRWNLLGNQSVKEALTHLRQQAQDDERDLRLAQEKWQ
SGQSQLSRMTGEKQSLEQQLQRTENTLNEVTKRFTEALQASPFNDENDFTGALLSEEARE
QLTALKDRFSQRQQQADALHAQANEKLAQHQAVRPKSLPEDLVYVDVLQMLVELGNILKN
GAQQQGEIRQQLQSDQQLHDKQRTLLEEVARRRQQCEDWAQLNQLIGSQSGHKFRIFAQG
LTLDHLVYLANRQLSRLHGRYMLQRKASDTLELQVVDTWQADATRDTRTLSGGESFLVSL
ALALALSDLVSNKTRIDSLFLDEGFGSLDGDTLDSALDVLDNLNATGKSIGVISHVEAMK
ERIQVQIRVKKRNGLGISQLDSQYAVK
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgaagattctgagtctacggctgaaaaacctcaactcgttgcagggtgaatggaaaatc
gatttcacccgcgagccgtttgtcagcaacggtctgttcgctatcaccggccccaccggc
gccggtaagacgaccctgctggacgctatttgcctggcgctataccaccagaccccgcgt
ctgaaagtaagccccagtcagaatgagctaatgactcgccacactgcggaatgcctggcc
gaagtcgagtttgaggtaaaaggcactgcctatcgcgcattctggagccagcgccgcgcc
cgcaacgcgccggacggcaacctgcaggcgccgaaagtggagctcgcctgctgcgcggac
ggcaaaatcatcaccgataaagtcagcgacaagctggcgaccatcgcgcagattaccggg
ctggattttgaccgtttcaccaagtccatgatgctgtctcagggtcagttcgcggccttc
cttaacgctgaagccagtaagcgcgccgaattgctggaagagttgaccggcacggacatc
tacggacggatctccgagcgcgtctttgaacagcataaagcggcgcaaagcgcgctcgaa
cagctgcaggcgcaggcgggcggtatcgaatgtctgagcagcgaacggcgtgccgagctc
gaacaacagctcagcgagctacagctacaggagcaggacaacacgcgtcatcgcgacgat
atcgccacccatcagcgctggtttgaaacgctgcaagaacatcagcgcgcgcttatatcg
agtgaggaaaaacagcggtcgctacagttagacagagttcaggcaaagccccaactggcg
cgtctggaggccagtattcccgcagaaaaactgcgcccgatctacagtgagcgccaacgt
tatgcgcaggaaaagacgctcctcgcgaatcttgtcgccaaactcgatctgcaaatgacg
caacagcagagcacgctggcgcaactgcaaacgcagaaagaaaatgcggcagcgcgtcag
caacaccatgccgaagaacgccagcggcaggaaacaatcatcaacgagcaggtccagccg
ctggaccagcgtatcgcgacgctacgggaacaacgcgaccagcagcagcagtcgcaagac
cagcagaaacagttgcaaaaagacctgatcgaaaaacagtccacgctgcgtcaggagcgc
gagcaggttaaagcgcggctggcccaaatcgccgaattcaggcagcaacacagcgtttac
cagtactggggcagccacattccgttatgggaagcgcagtttccccagttgcaggcctta
cagcgggagctgaagacgcagcaggcaaaggctgccgagcagcaggtccgagccgattat
tgccagcagcagcgcgctacgttgctggaaaaacagcaggcgcagcgaaagacgacggaa
ggcatccagcgaaatgacgaacagttgcagcaacgcctgcatgaacgcgagacggcccaa
ccgacggacggcttacgccaacagctcagcgatttggcggaccagcgccatgaacgtcaa
cgcttcgccgcccgcgtcaccgaattgcaaagcctgctcagccagcacaccctgctggag
tctcagttgctggacgacgggcatcgtatccagcagttggaacgagagctggaacaacaa
cgccgtgagcatcacctgcgcgtcggccactttgacgatctggataagcgccacgaactg
gaactgcgcatcgccaatctggaaagcgagcgaaaacagctgcaacccggcaaagagtgc
cccctgtgcggctccacgcatcatccggcgattgagcgctatcagtcgctgcgtccatca
gaaacccaactgcggctgcacgcgctgcgtcaggaagtcgaagcattacaggctaaagtg
gtacagacctcaacccagctgcatctgttgcagcagcagcggcaacagatgcagctgcga
ctggacaagattagcgatgaaatcaccacgctacggcaagagtgtcaaagcgtcagtgag
cgcttgcatatcgactttgacttcaatcaaccggaagcgttcgtccactggcaggcgcag
tgcgacgaacaggagaaagccttgcagtctcagctcgccgagcgtgagcaaactcgacga
cagatccaggatagtaaggatttactgacctccgcgcagcagtcgctgcagcagactgaa
cagcagttggcgctgaatgcgcagcaacgggaagcgctgacgcagtcccgagaggagttg
cggcttgcgcaggagaaaaccgagcaggagctggcgcggctgcacaatgcgctgagccat
aaactggccgagctccatctcgtcgctcccgccgatgcccagcaagaagattggctgaac
ctccgtcggcgtgaatggcagcgctggcaggagaacgaacacgaacagcacctgtgcgag
cccaggctatcggcgctgagtaccggcaccgaacatacgcaacaacgcctgaaagaaaca
gagacggctctcgccatgttgcagcaacagttgaaagcaacacggcaatcgctggaaacg
gcgcagcagtcacgctggaatctgttaggcaatcagagcgttaaagaggcactgacgcac
ctgcgtcagcaggcgcaggatgacgaacgcgacctccggctggcgcaggagaaatggcag
tcaggtcagtctcaactcagccggatgaccggcgagaaacagtcgctggaacagcaattg
caacgcaccgaaaataccctgaacgaggtgacaaagcgctttaccgaagcgttgcaggcc
agcccgttcaatgatgaaaacgacttcaccggcgcgctgttgagcgaagaggcgcgcgag
caactcaccgcgctgaaagatcgatttagccagcgtcaacagcaggccgatgcgctacac
gcgcaggcgaatgaaaaactggcccagcaccaagcggtcagaccgaaatcgctgccggaa
gacctggtctatgtggacgtgctgcagatgctggtcgaacttggcaacatcctgaaaaac
ggcgcgcagcagcagggcgagatccgccaacagctgcaaagcgaccagcagttgcacgat
aaacagcgtaccttactggaagaggtcgcacggcgcaggcagcagtgcgaagactgggcg
cagctcaatcagcttatcggctcccagagtggccataagttccgaatatttgcgcaaggg
ctaacgctggatcacctggtgtatctggccaaccgtcagctatcacgtttacacgggcgc
tacatgctacagcgtaaagcctccgacacgctggaactgcaggtggtcgatacctggcag
gcggacgccacgcgagatacccgcacgctctccggcggtgaaagtttcctcgtcagcctg
gcgctggcgctggcgctttccgatctggtgagcaacaagacccgcatcgactcgctgttc
ctcgacgaaggcttcggctcgctggacggagacacgctggactccgcgctggacgtgctc
gacaacctcaacgcgacggggaaatccatcggcgtcatcagccacgttgaggcgatgaaa
gagcgaattcaggtgcaaatccgtgtgaaaaaacgcaacgggttagggatcagtcagttg
gacagtcagtacgcggtcaaataa
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