Lonsdalea populi: I6N93_05270
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Entry
I6N93_05270 CDS
T06954
Symbol
mrdA
Name
(GenBank) peptidoglycan DD-transpeptidase MrdA
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
lpop
Lonsdalea populi
Pathway
lpop00550
Peptidoglycan biosynthesis
lpop01100
Metabolic pathways
lpop01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
lpop00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
I6N93_05270 (mrdA)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
I6N93_05270 (mrdA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
lpop01011
]
I6N93_05270 (mrdA)
Enzymes [BR:
lpop01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
I6N93_05270 (mrdA)
Peptidoglycan biosynthesis and degradation proteins [BR:
lpop01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
I6N93_05270 (mrdA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
Motif
Other DBs
NCBI-ProteinID:
QPQ25201
LinkDB
All DBs
Position
complement(1187297..1189201)
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AA seq
634 aa
AA seq
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MNIERKPFRDYTAESALFVRRALVAFLGILLLIGILVVNLYHLQISRFDDYRTRSNENRI
KLVPIAPSRGIIYDRNGTPLALNRTIYQLELIPEKVNNLEATLNALKPVADLTDEDLENF
RKERKRSRRFTSIAVKTGLSDVQVARFAVNQYRFPGVEVKGYQRRYYPYGSALTHVIGYV
SKINDRDLDRLGKEDKLADYAATHDIGKLGIERYYEDLLHGKPGYEEVEVNNRGRVIRQL
HEQPPQAGKDIYLTLDLNLQIYIEKLLEGSRAAVIVTDPRNGGILAMVSTPSYNPNLFVD
GISGKDYRALLNDPNRPLINRATQGVYPPASTVKPYIAVSALTAGVITPNTSLFDPGWWQ
LPGSEKRFRDWKKWGHGRLNLTKALEESADTYFYQVAYDMGIDRLSEWMSKFGYGDYTGI
DLSEERAGIMPTRDWKMRRYKKPWYQGDTIPVGIGQGYWTATPIQMLKALTTLVNDGQVK
TPHLLSSTQEHGVKVPYAQQEHTQIGDIHSGYWELVKDGMYGVANRANGTARKSFADSPY
KIAAKTGTAQVFGLKENETYNAHKIAERLRDHKLMVAFAPYNDPKVAMTIILENGGAGPA
VGTIVRQILDHIILGDNNVNLPVAPPAPPGSETE
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaacatagagcgtaaaccttttcgtgattatacggctgagtcggccctgtttgtacgc
cgcgcgctggtggcgtttttgggcattctgctgctgatcggcatcctcgttgtcaatctg
taccatctacagatttcacgctttgacgactaccgcactcgttccaacgaaaaccgcatc
aagctggtccctatcgcgcccagccgtggcattatctatgaccgtaacggcacgccgctg
gccctgaaccggaccatttaccagcttgagctgatccccgaaaaggtcaacaaccttgaa
gcgacgctgaatgccctcaagcccgtcgccgatctcaccgacgaagatctggaaaatttc
cgtaaagagcgcaagcgttcacgtcgcttcacctctattgcggtaaaaaccgggctatcc
gatgtacaggtcgcacgctttgcggtgaaccaatatcgctttcccggcgtggaagtcaaa
ggctaccagcgccgctattacccttacggttctgcactgacccacgtcatcggctacgta
tccaaaatcaacgaccgggatctcgatcggctgggtaaagaggataagctggcggactat
gcggccacgcacgatattggcaaactcggtattgagcgctactacgaagacctgctgcac
ggcaaaccgggctatgaagaggttgaagtcaacaaccgcggtcgcgtgattcgccaactg
cacgaacagccgccgcaggccggcaaagatatctatctgacgctggatctaaatctgcag
atttacattgaaaaactattggaaggcagccgcgccgcggtcatcgtcaccgatccgcgc
aacgggggtattctggcaatggtatcaacgcccagctacaacccgaacctgtttgtcgac
ggcatttccggcaaagattatcgcgcgctgctcaacgaccccaaccgtccgctcatcaac
cgtgccacgcaaggtgtctatccgccggcttcgaccgtgaaaccctatatcgcagtttcc
gcgctgacggcgggcgtcattacgcccaatacttctttgttcgaccccggttggtggcag
ttgccagggtcggaaaaacgcttccgcgactggaagaaatggggacacggacggcttaat
ctgaccaaagcgttggaagagtcggcggatacctatttctaccaggtcgcctacgatatg
ggcatcgaccgcctgtctgaatggatgagcaaattcggttacggcgactataccggtatc
gatctgtctgaagaacgcgccgggatcatgccgacgcgcgactggaaaatgcgacggtat
aaaaagccgtggtatcagggcgatactatcccagtcggcatcggccagggctattggacc
gccacgcccatccaaatgctgaaagcgctgacgacgctggtcaacgacggtcaggtcaaa
acgccgcatctgctctccagtactcaggagcacggcgtcaaagtgccttatgcccagcag
gagcacacgcagatcggcgatattcactcaggctattgggaactggttaaagacggcatg
tacggcgtagccaatcgcgccaacggcaccgcacgcaaaagttttgcggactcgccgtat
aaaatcgcggccaaaaccggtacggcgcaggtgttcggcctgaaggaaaacgaaacctat
aacgcccataaaattgctgaacggctgcgcgaccataagctaatggtcgctttcgccccg
tacaacgatccgaaagtggccatgaccattattttggaaaacggaggcgccggacccgca
gtcgggactatcgtgcgtcagatcctcgaccatattattttgggcgacaacaacgtcaat
ctcccggtcgcgcctcccgcgccccccggcagtgaaactgagtag
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