Lonsdalea populi: I6N93_07410
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Entry
I6N93_07410 CDS
T06954
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
lpop
Lonsdalea populi
Brite
KEGG Orthology (KO) [BR:
lpop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpop03019
]
I6N93_07410 (hrpA)
Enzymes [BR:
lpop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
I6N93_07410 (hrpA)
Messenger RNA biogenesis [BR:
lpop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
I6N93_07410 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
WHD_HA2
AAA_19
T2SSE
nSTAND3
PhoH
nSTAND_NTPase5
NACHT
AAA_25
DUF6145
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
QPQ25574
LinkDB
All DBs
Position
1701759..1705646
Genome browser
AA seq
1295 aa
AA seq
DB search
MKSQLTAFYPHINALMLRDQQRLRRRVQGALKVKNPEAQAAIAREIEADVATARQRVENR
RASLQAIRYPDALPVSQKKDAIMKAIRDHQVVIVAGETGSGKTTQLPKMCLELGRGVTGL
IGHTQPRRLAARTVADRIAAELDIPLGGTVGYKVRFNDQVGDNTLIKLMTDGILLAEIQQ
DRLLMQYDTIIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPQRFSRHFDNA
PIVEVSGRTFPVDVRYRPVVEEAEDSDRDQLQAIFDAVDELSHEGPGDILIFLSGEREIR
DTADALTRRDLPNTEILPLYARLSHQEQNRVFQSHHGRRIVLSTNVAETSLTVPGIRYVI
DPGTARISRYSYRTKVQRLPIEAISQASANQRKGRCGRVAAGVCIRLYSEQDFLSRPAFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDSRHIQDGVRLLEELGAIQTAENGHYR
LSPLGRQLAQLPIDPRLARMVLEAQKTRCVREVMIVTAALSIQDPRERPLDKKQASDEKH
RRFADKESDFMAFVNLWNYLQEQQKALSSSQFRRQCRTDFLNYLRVREWQDIYTQLRQAV
KTLGLPVNSEPADYRSLHCALLTGLLSHIGQKDVEKPEFSGARNMRFSIFPASGLFKKPP
KWTMVAELVETSRLWGRIAARIEPEWVEPLAQHLIKRSYSDPHWEKAQGAVIAQEKVTLY
GLPIVAARKVNYGAIDPVVSRELFIRHALVEGDWRTRHAFFRANLKLMAEVEDLENKSRR
RDILVDDETLFAFYDRRIPHDVVSSRHFDAWWKKAETDNPDLLNFEKTMLIKEGAGSISA
LDYPNFWQQGNLKLRLSYQFEPGADADGVTVHIPLPILNQVQDEGFEWQIPGVRRDLVIA
LIKSLPKPIRRSFVPAPNYAEAFLARAKPLERGLLDALERELRLMTGVTIPREEWHWEQV
PEHLQITFRVIDEKNRPLREGKSLSALKEQLKEKVQETLSAVADDGIEQSDLHIWSFGDL
PTRYEQKRGGYAVKAYPALVDEKNSVAIRLFDTPHQQQETMWKGLRRLLLLNIPSPIKYL
HEKLPNKAKLGLYFNPYGKVLDLIDDCIACGVDKLIAEAGGPVWTEEGYQRLHDKVRAEL
NDTVVDIASQVEKILTVVFAINKRLKGRVDMAMALGLSDIKSQMSGLVFRGFVTESGWQR
LPDVLRYLNAIERRLDKLAQDVHRDRAQMLKVEQVRQAWQQWLNKLPPDRQEEEEVKAIR
WMIEELRVSYFAQQLGTPYPISDKRVLQAMAQVAE
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcacagctcaccgcattttatccccacatcaatgcgttaatgctgcgcgaccag
caacggctgcgtcgccgggttcagggcgccctgaaggtgaaaaatcctgaggcgcaggcg
gccatcgcccgcgaaatcgaagccgacgtggcgacggcccgccagcgggtggaaaaccgc
cgcgcttcgctgcaggccatccgctatcccgacgcgttgccggtcagccagaaaaaagac
gccattatgaaggcgattcgcgatcatcaggtggtgattgtagccggggagaccgggtcg
gggaaaacgacgcagctgccaaagatgtgtctggagctgggccgtggcgtgacaggtttg
atcggacatacccagccgcgccgcctggcggcgcgcacggtggcggatcgtatcgccgcc
gaactggacatcccgctcggtggtacggtgggctataaggttcgttttaacgatcaggtc
ggcgacaacacgctgatcaaactgatgacggacgggatcctgctggcggaaattcaacaa
gaccggctgttgatgcagtacgacaccatcatcatcgatgaagcgcacgaacgcagtctc
aatatcgactttatcctgggttatctgcgccagctgctgcctaaacggcccgatctcaaa
gttatcattacctcggcgacgatcgacccgcagcgcttttctcgtcactttgacaacgcg
cccatcgtcgaagtttccggccgcacctttccggtggacgttcgttaccggccggtggtg
gaagaggccgaggacagcgaccgcgatcagctgcaggccattttcgacgcggtggatgag
ctgagtcacgaaggaccgggcgatattctgattttcctcagcggcgagcgcgaaattcgc
gatacggcggatgcgctgacgcgacgcgatttgccgaacaccgaaatattgccgctgtat
gcgcgcctgtcccatcaggagcaaaaccgcgtttttcagtcacatcacggcagacgcatc
gtgctgtccaccaacgtggccgaaacctcgctgacggtgcccggcattcgttatgtcatt
gaccccggcacggcgcgtatcagccgttatagctatcgcaccaaagtgcagcgcctgccg
atcgaagcgatttctcaggcgtccgccaaccagcgtaaaggccgctgcggacgcgttgcg
gcaggggtatgcatccgcctttattcggagcaggacttcctgtcgcgcccggcgtttacc
gatccggagatattgcgcaccaatctggcgtccgtgattttgcagatgacctcgctcggt
ctgggcgatatcgctgcgtttccgtttgtagaagcgccggacagccgccatattcaggac
ggtgtgcggctgctggaagagctgggcgcgatccagacggcggaaaacggccattatcga
ctgtctccgctgggccgacagctggcgcaactgcctatcgacccccgattggcgcgcatg
gtgctggaagcgcagaaaacgcgctgcgtgcgcgaagtgatgatcgtgaccgccgcgctg
tcgattcaggacccgcgcgaacggccgttggacaaaaaacaggcatcggacgaaaaacat
cgccgtttcgccgataaagagtccgatttcatggccttcgtcaacctgtggaactacctg
caggagcagcagaaagcgctgtcgtcgagccagttccgtcgccagtgccgcaccgacttc
ctcaactatttgcgcgtgcgcgaatggcaggatatctatacccagctgcgtcaggcggtg
aaaacgctggggctgccggtcaatagcgaacccgcggactaccgcagcctgcactgcgcg
ctgctgaccggcctgctgtcccacatcggtcagaaagacgtagagaagccggagttcagc
ggcgcgcgcaatatgcgcttctccattttccccgcctccggtctgttcaagaaaccgccc
aagtggacgatggtggccgagctggtggaaaccagccgtctgtgggggcgcatcgccgcg
cggattgagccggagtgggtggagccgctggcgcagcatctgatcaagcgcagctacagc
gacccgcactgggaaaaagcccagggcgcggtgatcgcgcaggaaaaagtgacgttgtac
ggtttgcctatcgtcgccgcacgcaaggtcaactacggcgcgatcgacccggtggtgtcc
cgcgagctgtttattcgtcacgcgttggtggaaggcgactggcgaacgcgtcatgcgttc
ttccgcgccaacttgaaattgatggccgaagtcgaggatctggaaaacaaatctcgtcgc
cgcgacattttggtggacgatgaaacgctgtttgctttctacgatcggcggatcccgcac
gatgtggtgtcctcccggcatttcgacgcgtggtggaagaaggctgaaacggataacccc
gacctgctcaacttcgaaaaaaccatgctgatcaaggagggcgcgggcagcatcagcgca
ctggactatcccaacttctggcagcagggcaacctgaagctgcggctgagctatcagttt
gaaccgggcgccgacgccgacggcgttaccgtgcatattccgctgccgatcctcaatcag
gttcaggacgaaggctttgagtggcagatccccggcgttcgtcgcgatctggtgattgcg
ttgatcaagtcgttgccaaagccgatacgccgtagcttcgtgcctgcgccaaactacgcc
gaagccttcctggcgcgcgccaaaccgctggagcgtggtctgttggatgcgctggagcgt
gaactgcgcctgatgaccggcgtcaccattcctcgcgaagagtggcattgggagcaggtg
cctgagcatttacagataaccttccgcgttatcgatgaaaaaaatcgcccgttgcgtgag
ggcaaaagcctgagcgcgctgaaagagcagctcaaagagaaagtgcaggagacgctgtcc
gccgtggcggacgacggcatcgaacagagcgacttgcatatctggagcttcggcgatcta
cccactcgatacgaacagaaacgcggcggctacgcggtcaaagcctatcctgcgctggtg
gacgaaaagaacagcgtggcgatccggttattcgatacgccgcatcagcagcaggaaacc
atgtggaaagggctgcgtcggttgctgttactgaatattccatcgccgatcaaatacctg
catgaaaagctgccgaacaaggcgaagctggggctgtacttcaacccttacggcaaagtg
ctggacctgattgacgactgcatcgcctgcggcgtggacaaactgatcgccgaggccggc
ggcccggtgtggaccgaagaggggtatcagcgtctgcatgataaagtccgcgcggagttg
aacgatacggtggtcgacatcgccagtcaggtggagaagatcctcacggtggtgttcgcc
atcaataaacgtctgaaaggacgggtggatatggcgatggcgctggggttgagcgatatc
aaaagccaaatgagcggtctggtgttccgcggcttcgtcacggaaagcggctggcagcga
ctgccggacgtcttgcgttacttgaacgcgatcgaacggcggttggataagctggcgcag
gacgtccaccgcgaccgcgcgcagatgttgaaggtggagcaggtgcgtcaggcgtggcag
cagtggttgaacaagctgccgccggatcggcaggaagaggaggaggtaaaagccattcgc
tggatgatcgaggagctgcgggtcagctactttgctcagcaactgggcacgccttatcca
atctccgataagcgcgtgctgcaggcgatggcgcaggtggcggagtaa
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