Lonsdalea populi: I6N93_08635
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Entry
I6N93_08635 CDS
T06954
Symbol
rsmF
Name
(GenBank) 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF
KO
K11392
16S rRNA (cytosine1407-C5)-methyltransferase [EC:
2.1.1.178
]
Organism
lpop
Lonsdalea populi
Brite
KEGG Orthology (KO) [BR:
lpop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lpop03009
]
I6N93_08635 (rsmF)
Enzymes [BR:
lpop01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.178 16S rRNA (cytosine1407-C5)-methyltransferase
I6N93_08635 (rsmF)
Ribosome biogenesis [BR:
lpop03009
]
Prokaryotic type
rRNA modification factors
16S rRNA modification factors
I6N93_08635 (rsmF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Methyltr_RsmB-F
YebU_pre-PUA_dom
Methyltr_RsmF_N
Methyltranf_PUA
Methyltransf_31
RsmF-B_ferredox
PCMT
Methyltransf_25
Motif
Other DBs
NCBI-ProteinID:
QPQ22777
LinkDB
All DBs
Position
1977138..1978586
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AA seq
482 aa
AA seq
DB search
MAKHIPATLSAEFIDATQRIMPGHLSMDDFVAACQRPLRRSIRVNTLKISVTDFCAFASA
HGWKLEPIPWCDTGFWISNADEEVVRLGNTLEHLAGLFYIQEASSMLPVSALFSNGSQPQ
RVLDVAAAPGSKTTQIAALMNNEGGIVANEYAASRVKVLHANLHRCGVSNTALTHFDGRV
FGGALPESFDAVLLDAPCSGEGVVRKDPAAMSHWSLESIASIAATQRELIVSAFHALKPG
GALIYSTCTLNHQENQDVCHWLLAQFPDACEIESLGKLFHTAHKAATEDGFLHVFPQIFD
SEGFFVARLRKTASIASLPHPGFKTGKFPFSPLHGKVAQSLIAAARQQGIEWSEDQLQLW
QRDDEIWLFPNALTPLLGKVRFSRVGIKLAERFAKGYRWQHEAIVALGNKIASAAFELNA
AEAQAWFQGKDVYPEAMPDVSEALLIWRNAPLGIAKRIGSRFKNTLPRELVRDGASAVPY
GD
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
gtggccaaacacataccagcaacgctctcagccgaatttatcgatgcgactcagcgcatc
atgccaggccatctgtccatggatgacttcgttgcggcctgccaacgacctctgcggcgc
agtatccgggttaataccctcaaaattagcgtaacggacttctgcgcatttgcctccgct
cacgggtggaagctggaacccattccctggtgtgatacaggattttggatttcgaatgcg
gacgaagaagtcgtgcggctcggcaatacgcttgaacacctcgctggattgttttatatc
caggaggccagctcgatgctgcccgtcagcgccctgttctctaacggttctcagccgcaa
cgcgtgctggatgtggcagcagctcccgggtccaaaacgacgcaaatcgccgcattgatg
aataatgagggcggcatcgtcgctaacgagtacgcggccagccgggtcaaagtgttgcat
gccaatttgcaccgatgcggcgtcagtaataccgctctgacgcatttcgacggacgcgta
ttcggcggcgcgttgccggaaagctttgacgcagtactgctggatgccccctgctcgggc
gaaggcgtggtcagaaaagatcccgcggcgatgagtcattggtcgctggaaagcatcgcg
agcatcgctgcaacccagcgcgagctgatcgtgagcgcgttccatgcgttaaagcccgga
ggagcgctgatttactccacctgcacactcaaccaccaggaaaaccaagatgtttgccac
tggctattggcacaattcccggacgcttgtgagattgaatctttaggcaagctgttccat
acggcacataaggctgcgacagaggacggttttttgcacgtattccctcagatttttgat
agcgaagggttcttcgtcgcacgcctgagaaaaaccgccagcatagcttccttgccgcat
cccggcttcaaaacgggcaaattcccgtttagtccgctgcatggcaaagtggcgcaatcg
ttgattgccgcagctcgccagcagggaatagagtggagtgaagaccagcttcaactgtgg
caacgcgatgatgaaatctggctattccctaacgcgttaacgccattgctcggaaaagtc
cgcttttcaagagtgggtatcaagctagccgagcgcttcgccaaaggctatcgctggcag
catgaagccattgtcgcgttaggaaataagatcgcctcggcagcatttgaactgaatgcc
gcagaggcccaagcctggtttcagggaaaggatgtgtatcccgaagcaatgcccgatgtc
agtgaagctctgctgatttggcgcaatgcgcctttagggatagctaaacggataggtagc
cgatttaaaaatacgctaccccgcgagttggtccgcgatggcgccagcgccgtgccttat
ggcgactaa
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