Lonsdalea populi: I6N93_09580
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Entry
I6N93_09580 CDS
T06954
Name
(GenBank) DEAD/DEAH box helicase
KO
K19789
DNA repair protein RadD
Organism
lpop
Lonsdalea populi
Brite
KEGG Orthology (KO) [BR:
lpop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpop03400
]
I6N93_09580
DNA repair and recombination proteins [BR:
lpop03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
I6N93_09580
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
ResIII
DEAD
Helicase_C
SWI2_SNF2
AAA_30
DUF7577
zf-tcix
AAA_16
AAA_22
MciZ
Zn_ribbon_3
SLFN-g3_helicase
DZR
UPF0547
Motif
Other DBs
NCBI-ProteinID:
QPQ22944
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Position
2179825..2181585
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AA seq
586 aa
AA seq
DB search
MSFTLRPYQREAVDATLDYFRQHASPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKE
LVEQNHAKYRALGLEADIFSAGLRQRQSQGKVVFGSVQSVARHLAHFDQAFSLMIVDECH
RIGDADDSQYRQILRHLQSVNPRLRLLGLTATPYRLGKGWIYQYHYHGMVRGDENCLFRD
CIYELPLRYMIKHGFLVPPDRLDMPVIQYDFSKLKVQGHGLFSEADLNRELKRQKRVTPQ
IIRQIQDYGADRKGVMIFAATVEHAAEITGLLPEGEAALISGETPPGARDTLITAFKQQK
LRYLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLSPGKTDCLILDYAGNP
FDLYTPEVGASKSHADSQPVQVFCPQCGFANLFWGKCTEDGTVIEHFGRRCQGFTEDDDG
RREQCDYRFRFKSCPQCGAENDIAARRCHQCDAVLVDPDDMLKAALKLRDALVLRCSGMS
LTPGEDSKGDWLRITYHDEDGAEVNERFRLHTPAQRNAFEYLFLRVHQRAPGVPFAWKTS
ADILQQQERLRAPDFVVARLQGKFWQIREKLFDYQGRYRRANELRG
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttacgctacgtccctaccagcgcgaggccgttgacgccacgctggactatttt
cgtcagcacgcctcacccgccgttatcgtccttcctaccggcgcgggcaaaagtctggtg
attgctgaactggcgcggctggcgcgcggacgcgtgctggtattggctcacgtcaaagag
ctggtggagcaaaaccacgccaagtaccgggcgctagggctggaagccgatattttttcc
gccggactgcgtcaacgtcaaagccagggcaaagtggtcttcggcagcgttcaatccgtc
gcacgccatctcgcgcattttgatcaggcgttttcgctgatgatcgtcgatgagtgtcat
cgtatcggagatgcggatgatagccagtaccgccagattctgcgccatctgcagagcgtc
aatccccggctgcggctacttgggctgaccgcgaccccttatcggctcggcaaggggtgg
atctatcaataccactatcatgggatggtgcggggagacgaaaattgtctgtttcgcgac
tgtatctatgagctgccgctgcgttacatgatcaaacacggttttctggtgccgccggat
cgtctggatatgccggtgattcagtacgacttcagcaaactgaaagtacagggccacggt
ctgttcagcgaggccgacctgaaccgggaactgaaacgtcagaaacgcgtcacgccgcaa
atcatccgtcagattcaggattacggggccgaccgcaaaggggtgatgatcttcgccgcc
acggtggaacacgccgctgaaatcaccggcctgctgccggagggcgaagcggcgctcatc
agcggagaaaccccgcctggagcgcgcgataccttgattacggcgttcaagcagcagaaa
ttgcgctatctggtcaacgtttctgtactgaccaccggctttgacgcgcctcatgtcgat
ctaatcgccatcttgcgtcctaccgaatccgtcagcctgtatcagcaaattgtcgggcgc
ggcctgcgcctatctccgggcaaaaccgactgcctgattctggactacgcgggcaatccc
ttcgacctctacacgccggaagtgggtgccagtaagtcgcatgcggacagtcagccggtg
caggtgttttgcccgcagtgcggctttgccaatctgttctggggaaaatgtacggaagac
ggcacggtgatcgaacatttcggccgccgctgtcaggggtttaccgaagatgacgacggc
cggcgcgagcagtgcgattaccgcttccgcttcaaaagctgcccgcagtgcggcgccgaa
aatgacattgccgcccgtcgctgtcatcagtgcgacgccgtgctggttgatccggacgat
atgctcaaagcagcgctaaaactccgcgacgctctcgtgctgcggtgcagcggcatgagt
ctgacgcccggagaggatagcaaaggcgactggctgcgcatcacctaccatgatgaggac
ggcgcggaggtcaacgaacgcttccggctgcatacgcccgcgcaacgcaacgcctttgag
tacctattcctgcgcgttcatcaacgcgcccctggcgttccgttcgcgtggaaaaccagc
gccgacatcctgcaacaacaggagcgactacgtgcgcccgacttcgtcgtcgcccgcctg
cagggaaaattctggcaaatccgcgaaaagctgttcgattatcagggccggtaccgacgc
gccaatgagctacgaggctga
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