Lonsdalea populi: I6N93_13725
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Entry
I6N93_13725 CDS
T06954
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lpop
Lonsdalea populi
Pathway
lpop03410
Base excision repair
lpop03430
Mismatch repair
lpop03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lpop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
I6N93_13725 (recJ)
03430 Mismatch repair
I6N93_13725 (recJ)
03440 Homologous recombination
I6N93_13725 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpop03400
]
I6N93_13725 (recJ)
DNA repair and recombination proteins [BR:
lpop03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
I6N93_13725 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
I6N93_13725 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I6N93_13725 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QPQ23648
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Position
complement(3145170..3146903)
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AA seq
577 aa
AA seq
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MTFVTQLRRRPAVESHHLPDTLPPLLRRLYAQRGVQAAQELDRSLRGLLNYRQLSGIDKA
VGYLQAALADKRRIVIVGDFDADGATSTALTVLALRRMGGQHIDFLVPNRFEDGYGLSPE
VVAQAAAKGAQLIVTVDNGISSHAGVDDAHRRGIDVLVTDHHLPGETLPAADAIINPNLA
DCDFPSKSLAGVGVAFYLMMALRARLRDGGWFEQHGLPEPNLAELLDLVALGTVADVVPL
DANNRILVAQGLNRIRAGKCRPGIRALLEVSNREAAQLVASDLGFALGPRLNAAGRLDDM
SVGVALLLCEDIVQARMLASDLDALNQTRREIEQGMQVEALQLCEQLERSSETLPCGLAM
YHPQWHQGVVGILASRIKERFHRPVIAFAPAGDGILKGSGRSVAGLHLRDALERLDTTCP
GLMLKFGGHAMAAGLSLEEARFEEFRQRFGELVGEWLDASQLQGVIWSDGELAVPELTLS
TAQLLRDAGPWGQTFPEPIFDGRFRLLQQRLVGERHLKVMVEPLAGGPLLDGIAFNVDTT
QWPDSSVRQVELAYKLDVNEYRGKRSVQLLIEHLWPL
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgactttcgtaacccagctccgccgccgtccggcggtagagagtcatcatcttcccgac
acgttgccgccgctgctgcgtcggctttacgcccaacgtggcgttcaggccgcgcaggag
ctggatcgcagtctgcgcggcttgctgaactaccggcagctttcggggatcgacaaggcg
gtgggctatctgcaagcggcgctggcggataagcgccgtattgtgatcgtcggcgatttc
gacgcggacggcgcgaccagtacggccctgaccgtgctggcgctgcgtcggatgggcggt
cagcatatcgacttcctggtgcctaaccgttttgaagacggctacggcctcagccccgag
gtggtggcgcaggcggcggccaaaggcgcgcagctgatcgtcaccgtcgacaacgggatc
tcttcccatgcgggcgtagacgatgcgcaccggcgtggcatcgacgtgctggtgacggac
caccatctgccgggcgaaaccttgcccgcggcggatgccattatcaaccctaacctggcg
gactgcgatttcccctccaaatcccttgcgggcgttggggtggcgttctacctgatgatg
gcgctgcgggcgcggctgcgcgacggcggctggtttgaacagcacggcttgcccgagccc
aatctggcagagctgctggatctggtggcgctgggtacggtggcggacgtggtgccgctg
gatgccaacaaccggatcctcgtggctcagggcctgaaccgcatccgcgcggggaaatgc
cggcccgggattcgcgcgctgctggaggtctccaaccgcgaggcggcgcagcttgtcgcc
agcgacctcggctttgctctcggcccgcgcttgaacgccgccggaaggctggatgatatg
tccgtcggcgtggcgctgctgctgtgtgaggacatcgttcaggcgcggatgctggcgagc
gatctcgacgcgctcaaccagacccggcgcgagatcgagcaggggatgcaggtcgaggcg
ctgcagctgtgcgaacagctcgaacgcagcagcgagacgctgccctgcggtctggcgatg
tatcacccgcagtggcatcagggcgtcgtcggtatcctggcgtctcgcatcaaggagcgt
ttccatcgcccggttattgcgttcgcccccgcgggcgacggcattctgaaaggctcgggc
cgctcggttgccggcctgcacctgcgcgacgcgctggagcggttggacaccacctgtccc
ggcctgatgctgaagttcggcgggcatgcgatggccgccgggctgtcgctggaagaagcg
cgttttgaggagtttcgccagcgcttcggcgagctggtcggcgagtggctggatgcctct
cagctacagggcgtcatctggtccgacggcgagctggccgtcccggaactgacgctgagt
accgcgcagctgctgcgggacgccggtccttgggggcagacgttccccgagccgatattt
gatggtcgcttccgcctgttgcaacagcgtctggtgggggagcggcatcttaaggtgatg
gtggagccgctggccggcggccctctgctggacggcatcgcgttcaacgtggataccacg
cagtggccggacagcagcgtccggcaggtggaattggcctacaagctggacgtgaacgag
tatcgcggcaagcgttcggtgcagctgcttatcgaacatttgtggccgctgtag
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