Lonsdalea populi: I6N93_13980
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Entry
I6N93_13980 CDS
T06954
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lpop
Lonsdalea populi
Pathway
lpop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6N93_13980 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpop03019
]
I6N93_13980 (pnp)
03016 Transfer RNA biogenesis [BR:
lpop03016
]
I6N93_13980 (pnp)
Enzymes [BR:
lpop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
I6N93_13980 (pnp)
Messenger RNA biogenesis [BR:
lpop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
I6N93_13980 (pnp)
Transfer RNA biogenesis [BR:
lpop03016
]
Prokaryotic type
tRNA degradation factors
I6N93_13980 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
KH_2
OB_RRP5_4th
aRib
S1_RRP5
KH-I_KHDC4-BBP
KH_SLS1_2
UPF0181
Motif
Other DBs
NCBI-ProteinID:
QPQ23694
LinkDB
All DBs
Position
complement(3196856..3198976)
Genome browser
AA seq
706 aa
AA seq
DB search
MLNPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGAKQPKPGQGFFPLT
VNYQERTYAAGRFPGGFFRREGRPSEGETLISRLIDRPIRPLFPEGFLNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFNGPIGCARVGYINDQYVLNPTTDELKESRLDLVVA
GTEGAVLMVESEADLLSEDQMLGAVVFGHEQQQIVIENINSLVAEAGKPKWEWHAPEVNE
TLYSRVKALSESRLGDAYRITEKQERYAQIDIIKADVAAALLAEDETLDEGEISDILGSI
EKNVVRSRVLSGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER
DAQTIDELTGERTDRFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKASE
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGENFVVLSD
ILGDEDHLGDMDFKVAGSRDGVTALQMDIKIEGITREIMQVALNQAKGARLHILGVMEEA
ISTPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAST
DGEKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLEMGQEVPVKVLEVDRQGRVRLSMKEATPTSQEPAAASGEE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
ttgctaaatccgatcattcgtaaattccaatatggtcagcataccgtcactatcgaaacc
ggtatgatggctcgtcaggctactgctgccgtcatggtcagcatggacgacaccgcggta
ttcgttaccgttgttggcgctaaacagccgaaaccgggtcagggatttttcccgctgacc
gtcaactatcaggagcgtacttacgctgctggtcgtttcccgggcggtttcttccgtcgt
gaaggccgtccgagcgaaggcgaaacactgatttctcgcctgattgaccgtcctattcgc
ccactgttcccggaaggtttcctgaatgaagttcaggttatcgctaccgttgtttctgtg
aacccacaggtcaacccggacatcgtcgctatgatcggcgcatccgccgcgctgagcctg
tctggcattccgttcaatggcccgatcggctgtgctcgcgttggttacatcaacgatcag
tacgtgttgaacccgaccactgatgagctgaaagagagccgtctggatctggttgtcgcc
ggtacggaaggcgctgtgctgatggtggaatcagaagcagacctgctgagcgaagatcaa
atgctgggcgcagttgtttttggtcatgagcagcagcagattgtcatcgaaaatatcaat
tctctggttgctgaagcgggcaagccgaaatgggaatggcatgcgccagaagtaaatgaa
acactgtacagtcgcgttaaagcgctgtccgaatctcgtctgggtgacgcttaccgcatc
accgagaagcaggagcgctatgctcagatcgatatcatcaaagctgacgtcgctgccgca
ctgctggccgaagacgaaacgctggatgaaggtgaaatcagcgatatcctaggcagcatc
gagaaaaatgtcgttcgtagccgggttctgagcggcgagccgcgcatcgatggccgtgaa
aaagacatgatccgtgggctggacgtccgtaccggtgttctgccgcgcacgcatggttct
gcactgttcacccgcggtgaaactcaggcattggtcaccgccacgctgggtacagaacgc
gatgcgcagacgattgacgaactgaccggcgagcgtactgaccgcttcctgctacactat
aacttccctccttactccgtgggtgaaacgggcatggtcggatcgccgaaacgtcgtgaa
attggtcacggccgtctggcgaagcgcggcgtgttggccgttatgccgaaggcgagcgag
tttccgtacaccgttcgtgtggtttccgaaatcactgagtccaacggttcttcatccatg
gcttccgtctgtggcgcgtctttggcgctgatggatgcgggggtgccgatcaaagcggcc
gttgccggtatcgcgatgggtctggtgaaagaaggcgagaacttcgtcgtattgtctgac
attctgggtgatgaagaccatctgggcgacatggacttcaaagtcgctggtagccgagat
ggcgttaccgcgctgcagatggacatcaagattgaaggcatcacccgcgaaatcatgcag
gtggccctgaaccaggcgaagggtgcgcgtttgcacatcctgggtgtgatggaagaggcg
atcagcacgccgcgtggcgatatctctgaattcgcaccgcgtatccataccatcaaaatc
agcactgacaagattaaagacgttatcggaaaaggcggctcggtcatccgtgctctgacc
gaagaaacgggtacgacaatcgaaatcgaagatgatggtacggtgaaaattgcttccacc
gacggcgaaaaagcaaaacacgcgattcgtcgtatcgaagagatcaccgcagaaatcgaa
gtcggccgtatttaccaaggtaaagtgacccgtatcgttgacttcggcgcgtttgtggcc
atcggcggcggtaaagaaggtctggttcatatttctcagatcgccgacaagcgtgttgag
aaagtgactgattatctggaaatgggtcaggaagttcccgtcaaggtactggaagtagac
cgtcaggggcgcgtccgcctgagtatgaaggaagcgactcctacatcccaagagcctgcg
gcagcctccggcgaagaataa
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