Limosilactobacillus portuensis: PRK60_01390
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Entry
PRK60_01390 CDS
T08838
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lpor
Limosilactobacillus portuensis
Pathway
lpor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PRK60_01390 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpor03021
]
PRK60_01390 (rpoC)
03400 DNA repair and recombination proteins [BR:
lpor03400
]
PRK60_01390 (rpoC)
Enzymes [BR:
lpor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PRK60_01390 (rpoC)
Transcription machinery [BR:
lpor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PRK60_01390 (rpoC)
DNA repair and recombination proteins [BR:
lpor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PRK60_01390 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WCT61047
LinkDB
All DBs
Position
311843..315478
Genome browser
AA seq
1211 aa
AA seq
DB search
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPEKQGLFDERIFGPTKDYEC
ACGKYKRIRYKGRVCDRCGVEVTSSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRSLEEVIYFASYVVLDPGDTPLEKKQLLSEAEYRDKKAEFGDRFTAEMGAAAIKKLLA
DVDLNKEAAELKEELKEATGQKRTRAIRRLDILEAFIKSGNKPEWMVLDVIPVMPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLKLQAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVSGPGNRPLKSLSHLLKGKQGRFRQNLLGKRVDYSGRSVIDVGPSLRMNQMGLPVP
MALELFKPFIMHELVKRGLSANVKAAKRKIDRRDDDVFDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPILVSGKSMRLHPLVCTAYNADFDGDQMAIHVPLSDEAQAEARLLMLAASHIL
SPRDGEPIVSPSQDMVIGNYYMTTEDKGREGEGMIFKDTDEAEMAYRNNYVSLQTRVGVQ
VSAFPDKPFTDEQRGKIMVTSVGKLLFNRILPKDFNYINEPTADNITKGVDDRFFLDPGE
DINEYLENAPLVPPFKKGFLSDLIAEVYKQYKVTKTSQFLDRIKDLGYYESTISGLTTAM
SDIHDLPEKPEIIKKARKQVALVTKQFRRGLITDDERYDRVIGIWNDAKDEVQNKLIEHM
DIHNPINMMSDSGARGNISNFTQLAGMRGLMASPNGKIMELPVLSNFYEGLSVLEMFISS
HGARKGMTDTALKTANSGYLTRRLVDVAQDVVVREKDCGTDRGLEVTAITNGNEMIEPLY
DRIMGRYTMKSVFDPKTGEKIVGKNVLIDEAMAQKIVDAGVKKVTIRSAFTCNTEHGVCE
RCYGRNAATGDRVEAGEAVGTVAAQSIGEPGTQLTLRNFHTGGVAGNEDITQGLPRVQEI
VEARNPKGRATITEVTGEVESIEENPAERTKDVTVKGETDTRTYTLPITARMRVAEGDFV
HRGTALNEGSIDPKELIRVRDVLSTETYLLAEVQKVYRMQGIDLLDKHVEIMIRQMMRKV
RVMDPGDTDMLPGQLMDIGQFRDANYKTLVAGNIPATARPVILGITKAALETNSFLSAAS
FQETTRVLTDAAIRGKNDPLVGLKENVIIGKIIPAGTGMSTYRNIKPKEVNVAAYSIKDL
EAKMKEEDKQN
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtcaataaatttgaaagtatgcagatcggcctggcatcaccagataagatc
cgtagttggtcttacggggaagtaaagaagcccgaaacgatcaattaccggactttaaag
ccagaaaaacaaggtctgtttgacgaacgaatctttggcccaactaaggactatgaatgt
gcttgtggtaagtacaagcggattcgctataagggtcgtgtctgtgaccgttgtggtgtt
gaagttactagttcaaaggttcgtcgtgaacggatggggcacattgaattggctgctccg
gtttcccatatttggtacttcaaggggattccaagtcggatgggtcttgtcttagacatg
agtccacgttcacttgaagaagttatttactttgcttcatacgttgttttggatccaggt
gataccccacttgaaaagaagcaattactttctgaagcagaataccgtgataaaaaggct
gaatttggcgaccgctttactgctgaaatgggtgccgctgctattaagaagttattagca
gatgtcgaccttaataaggaagctgccgaattaaaggaagaactaaaggaagcaactggt
caaaagcggactcgtgctatccgtcgtttggatattttggaagcattcatcaagtctggc
aataagccagaatggatggttcttgatgttattcctgttatgccacctgacttacgacca
atggttcaacttgaaggtggtcggtttgctacttctgacttaaacgatttataccggcgg
gttattaaccggaataaccgtttgaagcgtcttttgaagttgcaagcaccaggaatcatt
gttcaaaacgaaaagcggatgctccaagaagctgttgatgctttgattgataatggtcgt
cgtggtcgtcctgtttcaggtcctggtaaccgtccattgaagtctctttctcaccttctg
aagggtaagcaagggcgtttccgtcaaaacttgcttggtaagcgggttgattactctggt
cgttcagttattgatgttggtccatcattacgaatgaaccaaatggggcttcctgttcca
atggctcttgaattattcaagccatttatcatgcacgaattagttaagcgtggtttatct
gctaacgttaaggcagctaagcggaagattgatcgtcgtgatgatgatgtctttgatgtt
cttgaagatgtgatcaaggaacacccagttcttcttaaccgggcccctactttgcaccgg
ttaggtattcaggcttttgaaccaatcctggtttctggtaagtcgatgcgccttcaccca
ttggtatgtacagcttacaatgccgattttgatggggaccagatggcgatccacgtacca
ctttcagacgaagcacaagctgaagcacggttgttaatgcttgccgcttcccacattttg
agtcctcgtgacggtgaaccaattgtttctccatcccaggatatggttatcggtaactac
tacatgaccactgaagataagggtcgtgaaggtgaagggatgatcttcaaggataccgat
gaagctgaaatggcataccggaacaattatgtttcactgcaaactcgtgttggtgtacaa
gtttcagcattccctgataagccatttactgatgagcaacgtggcaagatcatggtaact
agtgtaggtaagttattgtttaaccggattcttcctaaagatttcaattacattaacgaa
cctactgctgataacattactaagggtgttgatgatcgcttcttccttgatccaggtgaa
gatatcaatgaataccttgaaaatgcaccgctagttccaccattcaagaagggcttcttg
tctgacttgattgctgaagtttacaagcaatacaaggttactaagacttctcaattcctt
gaccgaattaaggaccttggttactacgaatcaacaatttctggtttgactactgcaatg
tcagatattcatgacttgcctgaaaagccagaaattatcaagaaagctcggaagcaagtt
gccttagttactaagcaattccgtcgtggtttgattactgacgatgaacggtatgatcga
gttatcggtatctggaatgatgctaaggatgaagttcaaaacaagctgattgaacacatg
gacatccataacccaatcaacatgatgtctgactcgggtgctcgtggtaacatttctaac
tttactcagcttgccggaatgcgtggattaatggcatctccaaacggtaagattatggaa
ttgccagttctttctaacttctatgaaggtttgtcagtgttggaaatgttcatttcttct
cacggtgctcgtaagggaatgactgatactgccttgaagactgctaactcaggttactta
actcggcggttagttgatgttgctcaggatgttgttgttcgtgaaaaggattgtggtact
gaccgtggtcttgaagttactgcaattacaaacggtaacgaaatgatcgaaccgctttac
gaccggatcatgggtcgttacactatgaagtctgtcttcgatccaaagactggcgaaaag
attgttgggaagaacgttctcatcgacgaagcaatggcgcaaaagattgttgatgcgggc
gttaagaaggttactattcgttctgcatttacttgtaacactgaacacggtgtttgtgaa
cgatgctatggccgaaacgcagctactggtgaccgggttgaagctggtgaagcagtaggt
actgttgccgctcaatcaatcggtgaaccgggtactcaattgaccttacggaacttccac
actggtggtgttgccggtaacgaagatatcactcaaggtctccctcgtgttcaagaaatt
gtggaagcacgtaatcctaagggtcgtgcaaccattactgaggttactggtgaagttgaa
tcaatcgaagaaaatccggcagaacggaccaaggatgttactgttaagggtgaaactgat
acccggacatacaccttgccaattactgcacggatgcgggttgctgaaggtgactttgtt
caccgtggaaccgcccttaacgaaggttcaattgatcctaaggaattaattcgtgttcgt
gacgttctttctacagaaacttatcttcttgctgaagttcaaaaagtttaccgtatgcag
gggattgatctgttagataagcacgttgaaatcatgattcgtcaaatgatgcggaaggtt
cgtgtcatggatccaggtgacacggatatgttgccaggacaattgatggacattggtcaa
ttccgtgatgctaactacaagacattagtagcaggtaatatcccagctactgctcgtcca
gttatcttaggaattaccaaggctgctcttgaaactaacagcttcttatcagctgcttca
ttccaggaaactactcgtgtcctgacagatgctgctattcgtggtaagaatgacccatta
gttggtttgaaggaaaatgttattatcggtaagattattccagccggtactggtatgagt
acataccggaacattaagccaaaggaagttaatgttgctgcatactccatcaaggactta
gaagctaagatgaaggaagaagacaaacagaactaa
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