Limosilactobacillus portuensis: PRK60_01665
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Entry
PRK60_01665 CDS
T08838
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lpor
Limosilactobacillus portuensis
Brite
KEGG Orthology (KO) [BR:
lpor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lpor03009
]
PRK60_01665 (rlmD)
Enzymes [BR:
lpor01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
PRK60_01665 (rlmD)
Ribosome biogenesis [BR:
lpor03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PRK60_01665 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
PrmA
Methyltransf_15
Methyltransf_25
Cons_hypoth95
MTS
TRM5-TYW2_MTfase
Methyltransf_11
Methyltransf_12
N6_N4_Mtase
UPF0020
Ubie_methyltran
Methyltransf_23
RrnaAD
Methyltransf_32
CMAS
Methyltransf_4
Methyltrans_SAM
Motif
Other DBs
NCBI-ProteinID:
WCT61102
LinkDB
All DBs
Position
359241..360617
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AA seq
458 aa
AA seq
DB search
MKLNIPVHKNEEYPAKVVDLTYEGNGVVKIADFPVFVPNALPGEEITVRITKVASHFAWG
RVMAWQTKSPDRVDVKDKKYIQTGIAPLGHLKYEAQLKFKQHQIVELLAKAHLDEIEVLP
TMGMDKPYHYRNKAQVPVKMVRGQLETGFYKRGSHTLVPIEDFYIQDPAIDKAIMVVRDL
LRKYHVTPYDERTGKGVIRTVMVRRGYYSHEVMVVLVTNTKRLPMEKQIVDGIVAEVPGV
KSIVQNINDKKTNRLLGDKNKTLWGTDEIHDQLLGIDFAISPLSFYQVNPQQTERLYQTA
IENAGLDGSQTVIDAYCGIGTISLAAAKHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAQF
VVGKAEEQFAKWQEEGLKPDVVIVDPPRKGLAESLIEATGKMAPQKVIYVSCNPATLVRD
IQRFSEQGYHVTKPIQPVDQFPQTTHVESVTVLERTEK
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattaaatattccagtacataaaaacgaagagtaccccgctaaggtagttgatttg
acctacgagggtaatggggttgtgaagattgctgattttcctgttttcgttccgaatgct
ttgcctggggaagagatcactgtccgtattacaaaagttgctagtcattttgcttggggt
cgcgtaatggcctggcaaacaaagagtcctgaccgggttgatgtcaaggataagaagtat
atccagacgggaattgcaccacttggtcaccttaaatatgaagcccaattaaagtttaaa
cagcaccaaatcgttgagttgctggcaaaagcgcatctagatgagattgaggtgttgcca
acgatggggatggacaaaccataccattaccggaataaggcccaggtaccggtcaagatg
gttcgtggtcaattagaaacaggcttttataagcgtggaagtcatacccttgtgccaatt
gaagacttctatattcaagatccggctattgataaggcaattatggttgtccgtgattta
ttacggaaatatcatgtaacaccgtacgatgaacgaactggcaagggtgtgatccgaact
gtcatggtgcgtcgaggatattacagtcatgaggtaatggttgttttggttaccaacacc
aagcgtctaccgatggagaagcaaattgttgacgggattgttgctgaggtgccaggagta
aaaagcatcgttcaaaacatcaatgacaaaaaaaccaaccgtttacttggcgataagaat
aaaacgctctggggtaccgatgaaattcatgaccaattgctcggcattgattttgcaatt
tcaccattatcgttctaccaagttaatccgcaacaaactgaacgcctttaccaaacggcc
attgaaaatgccggcttagatggtagccagacagtcattgacgcttattgtggaattggg
actatctcattagccgctgctaagcacgccaagcaggtttacggggttgaaatcgttccg
gctgcgattgaagatgccaagcacaatgccaaacggaacgggattaagaatgcccaattt
gttgttggtaaggcggaagagcaattcgctaaatggcaagaagaaggtttgaagccggat
gtcgtgatcgttgacccaccacgcaaaggtcttgccgaatccttaattgaagcgactggt
aagatggcaccacaaaaagtgatttacgttagctgtaatcctgcaactttagttcgtgat
atccaacgtttttctgaacaagggtaccatgtgacaaaaccgattcagccagtcgatcag
ttcccgcagacgacgcatgtggagagtgttacggtcctcgaacgtacagaaaaatag
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