Limosilactobacillus portuensis: PRK60_04085
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Entry
PRK60_04085 CDS
T08838
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lpor
Limosilactobacillus portuensis
Pathway
lpor03030
DNA replication
lpor03430
Mismatch repair
lpor03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lpor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PRK60_04085 (dnaE)
03430 Mismatch repair
PRK60_04085 (dnaE)
03440 Homologous recombination
PRK60_04085 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpor03032
]
PRK60_04085 (dnaE)
03400 DNA repair and recombination proteins [BR:
lpor03400
]
PRK60_04085 (dnaE)
Enzymes [BR:
lpor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PRK60_04085 (dnaE)
DNA replication proteins [BR:
lpor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PRK60_04085 (dnaE)
DNA repair and recombination proteins [BR:
lpor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PRK60_04085 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
WCT61539
LinkDB
All DBs
Position
808471..811821
Genome browser
AA seq
1116 aa
AA seq
DB search
MDFVPLQVKSSFSLLRSPIRITELVTTAKERGYSAIALTDKNVLYGAIDFYNAAKKAGIK
PIIGLQLTIALNNVDGTNLELLFLAKNRSGYQNLMEISTRQQTSEHDMLPLTFEQIKPFL
SSLYVIIPPQSTVFSWLKAEDAVVNLLHESTDRDSLLLGINPQLDQIQRSTLSQLAASHS
LPLVGVSPVEYLNADDLFTSKVLQAIDANTQLENVEEKAKELGKNYLQPQADVLGAYQAV
DLEQAAEKTVEIAAKCNIDFEFKQPILPHFDTPTGKSFAEYLRYLCIEGLKKRQIAPGLK
LTDYQQRLTKELKVIHEMGFDDYFLIVWDVMRFAHRTKITTDPGRGSAAGSLVAYALAIT
DIDPLQYNLLFERFLNPERAQMPDIDLDIPDNRRSEVLEYVHQKYGHSRVAQIITFGTLA
AKQVIRDVSRVFGLNRFAINELTGALPHGLHISLAGSLKESQRLRNLLNDHPEYRLLYQV
AQKLEGLPRHYSIHAAGIVLSEKPLHEIVPLQNGSEGLLMTQFPKDTVEALGLLKMDFLG
LRNLSIMDNSLKLIRQQNPQFDLSKISLTDSKTLALFQKGLTDGVFQFESAGIREVLVNL
HPDSFEDIVAVNALYRPGPLENIPHFIARKQGKENYQLPDPSLEPILGATYGILVYQEQV
MQLASVMAGFSLGEADLLRRAMSKKKRATMEGMRTKFMKGAQANGYSAELAERVFNYIDQ
FANYGFNRSHAVAYSKMAFQMAYLKANYPAEFFTALMNAEPNVDKLKMHVQDARRSGVKL
VGPRINESQQQFSLSRNQLFFGLAAIKGLRRDFIREILQERNQNGPYKDIRNFISCLASK
WQKPELIAPLIYAGAFDDLGYNRAEMIDALPMLISGIQLFSSTNELGADPELQSTIAARQ
EYPLTERLAKENEYLGVYLSGHPVTQYQDLAIKYRVQLASQLRPGQTVVILMLINRVKTI
HTKKDHRQMAFLSGTDQTGEIEATVFPRQYTRYQSLLKSNQVVMINGHTEQREGHGLQVI
VDQIRDANELRQQQRHTQQRWFLRIMPENDNQHVLQQLYQFMTAHRGPIPVIIYYPENDQ
KKIQPQSRWLNSQAETRQGLIKILGKDNVVLKRSQQ
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
gtggattttgtaccgctccaagtaaaaagtagtttttctctgttaagaagcccgattcgc
attactgaattggtcacaaccgcaaaggaacgcggttactctgcaattgcattgaccgat
aagaatgtattatatggggcaattgatttctataatgccgctaaaaaagcaggtatcaaa
ccaataatcggcttgcaattaacaattgcgttaaacaatgttgacgggacgaacttggaa
ttactgtttttagctaaaaatcggtcaggctaccaaaatttaatggagatttccactcgt
caacaaacgagtgagcatgatatgcttccgttaacttttgaacaaattaaaccgtttctt
tcatcactatacgttattattccaccgcaatcgacagtttttagctggttaaaagccgag
gatgcagttgttaatcttcttcatgaaagtactgatcgggacagtctccttttaggaatt
aatccccagttagaccaaattcaacgctcaacactgagccaactagcagcgagccattct
ttaccattagtgggggttagcccagttgaatatttgaatgcagatgatctatttaccagt
aaggtccttcaggcaattgatgctaatactcagttagaaaacgttgaagaaaaagctaaa
gaacttggaaagaactatcttcaaccccaggcagatgttttaggggcctaccaagcagtc
gatcttgagcaagcggctgaaaaaacggtcgaaattgcagcaaagtgtaatattgacttt
gaatttaagcagcccatcctcccgcactttgatacgccaacggggaaatcttttgctgaa
tatcttcgttacttatgtattgagggattgaaaaaacggcagattgcgccggggttaaaa
ctaactgactatcaacaacggttaactaaggaattaaaagtaatccatgaaatgggattc
gatgactatttcctgattgtttgggacgtaatgcggtttgctcaccggacaaaaattaca
actgatccgggaagaggatcagccgcgggatcattagtagcttatgcattagcaattact
gatatcgatccgctacaatataatcttttatttgagcggttccttaatcccgaacgagct
caaatgccggatattgaccttgatattcctgataatcggcgaagtgaggttcttgaatat
gtccaccagaagtatggacacagtcgggtggctcaaattattacttttgggacgctagcc
gctaagcaagttattcgtgatgtgagtcgggtctttgggttaaaccgttttgcaatcaat
gaattaacaggagcgctcccccatgggttgcacattagtctggcagggagtttgaaagag
tctcagcggttacgtaaccttttgaacgatcacccagaatatcgattgctatatcaagta
gcacaaaagctagaaggtttgcctcgtcactactcaattcatgcggcggggattgtttta
tctgaaaagccgcttcatgaaattgtccctctgcagaacggaagtgaagggttattgatg
actcagttcccaaaggataccgtggaggcattagggctattaaaaatggacttccttggt
ttgcggaatctttcaataatggataatagcttaaaattgattcgtcagcaaaatccccaa
tttgatctttccaaaatctcattaacggattctaaaacgttagctctcttccaaaaaggg
ttaactgatggtgtatttcaatttgaatcagcgggaattagggaagtattagtcaatctt
catcctgacagttttgaagacattgttgcggttaatgcgctttaccgaccgggtccgctt
gaaaatattccccattttattgctcgtaaacaggggaaagagaattaccagttgccagat
ccatcactagaaccaattttgggagcaacgtatggtatcttagtctatcaggaacaagta
atgcagctagcatcggtaatggctggatttagtctgggtgaagccgatcttttgcgtcgt
gcaatgagtaagaagaagcgtgcgacaatggaggggatgcggactaaattcatgaagggt
gctcaagcaaatggctattcggcagaattagcagagcgcgtttttaactatattgaccag
tttgctaactacggatttaatcggtcacatgcggttgcgtactcaaaaatggcctttcaa
atggcttacctaaaagccaattatcctgctgaattctttaccgcgttgatgaatgctgaa
ccaaacgtcgataaattaaagatgcatgttcaggatgcccgtcgttcaggtgttaagcta
gtcggtccccggattaatgaaagtcagcagcaattttcactgtctcggaatcaattattc
ttcggcttggctgctatcaaggggcttcgtcgcgactttattcgtgaaattcttcaagaa
cgaaaccaaaatggtccctataaggatattcgtaatttcatttcttgcttagccagtaaa
tggcaaaagccggaattaattgcaccactgatttatgcgggcgcatttgatgatcttggc
tataaccgtgccgaaatgattgatgcattgccaatgctgatctctggaattcaattattt
agtagcactaatgaattaggggcagatcctgaattgcagtctacaattgctgctcggcaa
gagtatccattaacggagcgcttagcaaaggaaaacgaatatttaggggtctatctttca
ggacacccagtgacccaataccaagatctagcaattaaataccgagtccagctagcaagt
cagctccgacctggccaaacggttgtgatattaatgttaattaatcgggttaaaacaatt
catactaaaaaggatcaccgtcaaatggcatttctttcaggaacggaccagactggcgaa
attgaagccacagtctttccgcggcaatatacccgatatcagtcattattgaagagtaac
caggtagtgatgattaatggacatacagagcagcgagagggacatggccttcaggtaatt
gttgatcaaattcgggacgctaatgaattgcgtcaacagcaacgccacactcaacaacgg
tggttcttgcgaatcatgccagaaaatgataatcagcatgtcctacaacaactttatcag
tttatgacagctcatcggggacctattccagtgattatttattatcctgaaaatgaccaa
aaaaagattcaaccgcagtcacgatggttgaattcacaggctgaaacgcgtcagggactg
ataaaaatccttggtaaggacaatgttgttcttaagcgaagtcagcaatga
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integrated database retrieval system
