Limosilactobacillus portuensis: PRK60_04135
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Entry
PRK60_04135 CDS
T08838
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lpor
Limosilactobacillus portuensis
Pathway
lpor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PRK60_04135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpor03019
]
PRK60_04135
03400 DNA repair and recombination proteins [BR:
lpor03400
]
PRK60_04135
Enzymes [BR:
lpor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PRK60_04135
Messenger RNA biogenesis [BR:
lpor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PRK60_04135
DNA repair and recombination proteins [BR:
lpor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PRK60_04135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Cas3-like_C_2
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
WCT61549
LinkDB
All DBs
Position
819841..821307
Genome browser
AA seq
488 aa
AA seq
DB search
MISDRQLLIKLNEQFGFTTFRDGQQETIKAVLNHQDTLAILPTGGGKSLLYQMPGYLLSG
TVLIVSPLISLMQDQVDRLHRSGEKRVLMINGQLTGKSRHQALQRLSSFKFIFTSPETLA
NPEIINKLKKIRITLFVIDEAHCISQWGPDFRPEYLLLSSVRKELGSPTTLLLTATATPE
VRRDIIQKMGLKENTVTQVIRSVNRPNIYYAVERFLSVNEKEQYLINLVNQLAGSGIIYF
ASRKLATQFAETLNQKTRKTVAAYHAGIAPIDRYRLQQQFMDNQVQLICATSAFGMGIDK
DDIRFVIHFHEPANLESYVQEVGRAGRDGKPSLALLLYSPGDEQIQRTLNHIELPDKKLL
DAVREKRQPSSVLGDNRELFTFYLRHGYDGETIIKAFKSRQASLKEHLNWMARYVNNTKL
CRRQMILEYFGEQLVKPQVPCCDITDETLLQQFEKNDDGLTKHSQLTVKLNWQERLYQLF
NINHNKEN
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgattagtgatcggcaactgttaataaaactaaatgagcaatttggcttcaccactttt
cgtgacggtcaacaggaaacgattaaagcagttcttaatcatcaagatactttggctatt
ttgccgactggtggtggaaaatcattgctttaccaaatgccgggatacttgttgtccggg
acagtcttgatcgtgtcaccgttaatttccttgatgcaggatcaagttgatcggcttcac
cgttctggtgaaaaacgggttctaatgatcaatggccagctaactggtaaaagtcgtcac
caggccttacagcgtctgtcttcgtttaaatttatctttacttcgccagaaacacttgct
aatcctgaaattattaataagttaaagaaaattcggattacgttgtttgttattgatgaa
gctcattgtatttcgcagtgggggcctgactttcgtccagaataccttttgcttagttca
gtgagaaaggagcttggttcaccaacgacacttttactgacggccacggcaactccggaa
gtacgtcgggatattattcaaaagatggggttgaaggagaacacggttactcaagtaatt
cgttctgtgaatcggcccaacatttattatgcggtagaacgtttcctttccgttaatgag
aaggagcagtatctaattaatctagttaatcaattagcaggttctggaattatttatttt
gcaagtcgtaaattagctacacagtttgctgaaacgttaaatcagaaaacaaggaagacc
gtggctgcttaccatgcgggaattgctccaatagaccgctaccgtttacagcaacagttt
atggataaccaggttcagttaatttgtgccactagtgcttttggaatgggaattgataaa
gatgatatccgctttgtcattcattttcatgaaccagcgaatctggagagctatgtccaa
gaggtcggacgggcaggtcgtgatggcaagccaagtctagcgttgcttctgtattctcca
ggtgatgaacagattcaacgaacgctaaaccatattgaacttcctgataagaaattatta
gatgctgtaagggaaaagcgccaacctagtagtgtattgggagataatcgagaattattt
accttttacttacgacacggctatgacggtgagacaattataaaagcatttaaaagcaga
caagcaagtctaaaggagcatttgaattggatggcaagatacgtaaataatactaaatta
tgccgccgacagatgattttagaatatttcggtgaacagctggttaaaccccaagtacca
tgttgtgatattactgacgaaacgctgcttcaacagtttgagaaaaacgatgatggactg
actaagcactcacaactaacggtaaaactaaattggcaagaacgactttatcagttattt
aatattaatcataataaagaaaactag
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