Limosilactobacillus portuensis: PRK60_08080
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Entry
PRK60_08080 CDS
T08838
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lpor
Limosilactobacillus portuensis
Pathway
lpor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PRK60_08080 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpor03400
]
PRK60_08080 (mfd)
Enzymes [BR:
lpor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PRK60_08080 (mfd)
DNA repair and recombination proteins [BR:
lpor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PRK60_08080 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
SNF2-rel_dom
MFD_D3
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WCT60508
LinkDB
All DBs
Position
complement(1557796..1561308)
Genome browser
AA seq
1170 aa
AA seq
DB search
MELTDFCTRTKEFKQVLTAIQKHQRQLITGISGSARTLLLMALQKNLDQPQLVITDSLFH
MQELAADLENLLPEEEIYQFPVEEVLAAEVATSSPNYRLQRVQALNALINNKSAIVIAST
AGLRRNIVAPELFKQAKLSLKVGGEIDPEKAADQLSSMGYQRQKMVLRPGDFAVRGSIID
IYSLNTDDPVRVDLFDTEIDSLRYFDASTQRSIKNVDEVEILPATDFILPVNEFERVEEK
LAEQYEQLKKQADGEDELEQLANWFEPLLTDLKQHQLTNEFLTYTNLIYPQGHSLLDYLS
ADGAVHIDDWTRIKQTAKEIGEEELGWLEDKAKHHQILQAVSLGHDVSKLISSDKHAQDF
WALFRKGMGQLRFKVLTDFGSRTMQRFFGQMPLLKTEMQRWLDQGQTVILMATSKERRNQ
IAQTMDDFGIKVTSTELNHLQQNVVQLVPTNLANGFEIPQMGLVIITEGEMFKQVKKRRI
RPQKLANAERIKNYLDLKPGDYVVHVNHGIGIFSGIRTMEVDGVHQEYMVINYRNNAQIF
VPVTQLNLVQKYVSAESKTPHINKLGGNEWAKTKRRVASKVEDIADELVDLYAKRETEKG
YAFPKDDYLQKQFDANFPYSETRDQLRSITEIKENMEKAKPMDRLLVGDVGYGKTEVALR
AIFKAVTGGKQVAFLVPTTVLAQQHYDTMKKRFEGFPIEIALMSRFKTRKELKETEKGLA
DGTVDVVVGTHRILSKDVHFKDLGLLIVDEEQRFGVKHKEKLKQLKNNVDVLTLTATPIP
RTLHMSMLGVRDLSVLETPPAGRYPIQTYVMEQNSGAIRDGILREMQRGGQVYYLHNRVM
DIEETVARLQQLVPEARIGYIDGQMSENQLESVLYEFIQGGYDVLVTTSIIETGVDIPNV
NTLFVENADRMGLAQLYQIRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFTELG
SGFKIAMRDLSIRGAGNLLGKQQHGFIDSVGYDLYSSMLSDAVAKKQGKKQVDKSDAEIE
LCVEAYLPDDYINDQQQKIELYKTIRTAASDEELLDIQGDLIDRFGDYPTAVGNLLLISQ
LKQHADLAMIASIKRQRDQIMITFTEKGSRNITAPQIIKELAQTKFKATIGENDRQLNAR
LVIQPKMTIDDWLHQLLKFVTALSNLKKNK
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atggaattaacagacttttgcacccgaacaaaggaatttaaacaggttttgacggcaatt
caaaagcatcagcgacagttaatcactggtatttcaggatcggcgcgaacattgctactt
atggcattgcagaagaaccttgatcagcctcaattagtgattactgatagtctttttcat
atgcaagagctggcagcggatttagagaacctgttaccagaggaggaaatctatcaattc
ccagtagaagaagttttagctgccgaagtagcaacaagttcaccgaattatcggctgcaa
cgagttcaagcattgaacgcgttaattaataacaaatcagcaattgtaattgcatcgact
gctggtcttcgacgaaatattgttgcgccagaattgtttaaacaggcaaaattatcactt
aaagtcggcggtgaaattgatcctgaaaaagcggcagaccaattaagttcaatggggtac
cagcgccaaaagatggttctgcgtccaggagactttgctgtccggggatcaattattgat
atctactccttgaataccgatgatccggtccgggttgatctgtttgacactgaaattgac
tccttgaggtattttgatgctagtacgcaacgaagcattaaaaacgttgatgaggttgag
attcttcccgcaactgactttattcttccggttaatgagtttgagcgagtagaagaaaaa
ttagccgaacagtatgaacagttgaaaaaacaggctgatggagaagatgagctagagcaa
ctggcaaactggtttgaaccgttacttacggatctaaagcagcaccagttaactaacgaa
tttcttacttatactaatttgatttatccgcaagggcattctcttctggattatctttct
gctgatggggcggttcatattgatgattggacgcggattaagcagacggctaaagagatc
ggtgaagaagaattaggatggttagaagataaggctaaacatcatcaaatcttgcaagca
gttagccttggtcatgatgttagtaaattaattagcagtgacaaacatgctcaagacttt
tgggcactcttccgcaaggggatgggccagttaaggtttaaggttcttactgactttggt
agtcgaacgatgcaacggttctttggccaaatgccactgttgaaaactgaaatgcaacgg
tggctcgatcaggggcaaaccgttattttaatggcgaccagcaaggagcgacgaaaccaa
attgcccaaacaatggatgattttggtattaaagttacctcaaccgagttaaatcatctt
caacaaaatgtcgttcaattagtgccaaccaatttagcaaacggctttgaaatccctcag
atgggactagtaattattactgagggagaaatgtttaagcaggtcaagaagcggcgaatt
cgtccacagaaacttgctaacgctgaacggattaagaattacttagacctaaaaccagga
gattatgtcgttcacgttaaccacgggattgggatctttagcggaatccggaccatggaa
gttgatggtgttcaccaagagtacatggtaattaattatcgaaataatgcgcaaatcttt
gttccggttacccaattaaacctggtacaaaaatacgtttctgctgaatcgaagaccccg
cacattaacaagttgggtggcaacgaatgggctaagactaaacgccgcgttgcctctaaa
gtagaagatattgctgacgagttggtcgacctatacgctaaacgggaaaccgaaaaaggg
tatgcctttccaaaggatgattacctgcaaaagcaatttgatgctaactttccttactcc
gaaacccgtgatcaattacgaagcattacggaaattaaggagaatatggaaaaagcaaaa
ccgatggatcgattgctagtcggggatgttggttacgggaaaaccgaagttgccttacgg
gcgatttttaaggcagttactggcggaaaacaagtagcctttctcgtaccaacgaccgtc
ttagctcaacaacattatgacacgatgaaaaaacgatttgagggtttcccgattgagatc
gcattgatgtcccgcttcaagacaagaaaagaattgaaggaaactgaaaaggggcttgct
gacgggacggttgatgtcgttgtcggtacgcaccgaatcctatctaaagatgtccatttc
aaggacttggggctgttaattgttgatgaggaacaacgatttggggttaaacataaggaa
aagctgaaacaattgaagaacaacgttgatgtcctaacgttgacagccacgccaattcca
cgaacacttcatatgtcaatgcttggtgttcgtgatttgtctgtcttggagacgcctcct
gctggtcggtatccgattcagacctatgtgatggaacaaaattcaggggctattcgagat
gggattcttagggaaatgcagcggggtggacaagtttattatctgcataaccgggtaatg
gatattgaagagaccgtagctcgcttgcaacaactggttcccgaagcgcggattggctat
attgacggccagatgagtgagaatcagcttgagtcagtcctttatgaatttattcagggc
gggtatgacgtgttagtgacgacttcgattattgaaaccggggttgatattccgaatgtt
aatactctctttgttgagaatgccgatagaatgggattagcccagctgtaccagattcgc
ggccgaattggtcgaagcaatcgggttgcttacgcttactttatgtaccagcccaataaa
gttttaacggagttgggtgaaaagcggttagcggcaattcgcgattttaccgagctgggt
tcaggatttaagattgcgatgcgcgacctctcaattcgtggtgctggaaatcttctggga
aagcagcaacacggttttattgactcagtcggctatgacctttattcttcaatgctgagt
gatgctgttgccaagaagcaggggaaaaagcaagttgataagtcagatgctgaaattgaa
ctgtgtgtcgaagcttacttacctgatgattacattaacgatcaacaacaaaaaattgag
ttatataagaccatccgcaccgcggccagtgatgaagaactccttgatattcaaggtgat
ttaattgatcgctttggtgattatccaacggctgtcgggaatttactcctgattagtcag
ttgaaacaacatgcggatttagcgatgattgcaagtatcaaacgacaacgtgatcagatc
atgattacttttacagaaaaggggagccggaacattacggcgccacaaattattaaagag
ttagctcagacaaaatttaaggcaacaattggtgaaaatgatcggcaattaaatgcccgg
ctggtaattcaaccgaaaatgacgattgatgattggcttcatcagcttcttaagtttgtc
acagcattgagcaatttaaagaaaaataaatag
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