Limosilactobacillus portuensis: PRK60_08150
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Entry
PRK60_08150 CDS
T08838
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lpor
Limosilactobacillus portuensis
Pathway
lpor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PRK60_08150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpor03019
]
PRK60_08150
03009 Ribosome biogenesis [BR:
lpor03009
]
PRK60_08150
Enzymes [BR:
lpor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PRK60_08150
Messenger RNA biogenesis [BR:
lpor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PRK60_08150
Ribosome biogenesis [BR:
lpor03009
]
Prokaryotic type
rRNA helicases
PRK60_08150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
CMS1
LidA_Long_CC
Motif
Other DBs
NCBI-ProteinID:
WCT60521
LinkDB
All DBs
Position
complement(1580670..1582175)
Genome browser
AA seq
501 aa
AA seq
DB search
MKFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTVAFGLPII
EHVDTDNPNVQAIIISPTRELAIQTQEELFRLGKDKHVRVQVVYGGADIRRQIRNLKQHP
QILVGTPGRLRDHLNRHTVKLDHIKTLVLDEADEMLNMGFLDDIEAIINQTPADRQTLLF
SATMPPEIKKIGVKFMTDPTMVRIKAKELTTDLVDQYYVKARDYEKFDIMTRLIDVQDPD
LTIVFGRTKRRVDELSRGLIARGYNAAGIHGDLSQDRRTKIMKQFKRGELDILVATDVAA
RGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLREIEKLTRV
RMLPLKPPTAEEAFKGQVASAFNDIDELISQDSTERYQESAEKLLATHDATDLVAALLNE
MTKEPASDVPVKITPERPLPRRNHRNGRSGHGYRGPREHRHNNYGGHRRHNNGGRSRSRR
HDNHGSNHSSRHAFNIRHRED
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttagtgaattaggattgtcagatagtttattaaaggcaatcaaacggagtggt
tatgaagaagcaacaccgattcaagaacaaaccattccaatggtattaaagggacaagac
gtaattggtcaagcacagacaggtacagggaaaacagttgcgtttgggttgccaattatt
gaacacgttgatacggataaccctaatgtccaagcaattatcatctcgccaactcgggaa
ttagcgatccaaactcaagaggaactattccgtttagggaaagataagcatgttcgggtg
caagttgtatacggtggggctgatatccgtcgtcagatccggaacttaaagcaacacccg
caaatccttgtggggacgccgggacgactccgtgatcacctgaaccgccatacggtaaag
ctagaccacattaaaacattagtgctcgatgaagcggatgaaatgctgaatatgggattt
ttggatgatattgaagcgattatcaaccaaacacctgctgatcggcaaacactcttattc
tccgccacaatgccaccagaaattaagaagatcggggttaagtttatgactgacccgaca
atggtgcggattaaagcaaaggaattaacaactgatttagttgatcaatattacgttaaa
gctcgggactacgaaaagtttgatattatgactcggctgattgatgttcaggatccagat
cttaccattgtttttggtcggactaagcgccgggttgatgaattatcacgggggctaatt
gctcgtggctataatgcagccgggatccatggtgatctaagtcaggatcgccggactaag
atcatgaagcaattcaaacgcggtgaactggatatccttgttgcaaccgatgtggcagcg
cggggattggatatttcaggggtgacccacgtatacaactacgatattccgtcagatcca
gacagctatgttcaccgaattggtcggactggtcgtgccggacatcatggtgtttcgtta
acatttgttacaccaaatgaaatggattacctgcgagaaatcgaaaaattaacccgggtt
cggatgctcccattaaagccaccaacggccgaggaagcatttaagggacaagttgccagt
gcctttaatgatattgatgagttgatttctcaagattctacggaacgttaccaagagtct
gcagaaaagttattggcaactcacgatgccaccgatttggttgctgcattgctgaatgaa
atgactaaggaaccagctagtgatgtgccagtcaaaatcacaccagaacggccattacca
cggcggaatcaccgtaatgggcgctcaggacatggttaccgtggtccacgtgagcatcgc
cataacaactatggtggtcatcgtcgccataacaacggtggtcggagtcgttcccgtcgt
cacgataatcatggtagtaatcattctagtcgacatgcttttaatatccgtcatcgggaa
gattag
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