Limosilactobacillus portuensis: PRK60_08350
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Entry
PRK60_08350 CDS
T08838
Symbol
helD
Name
(GenBank) RNA polymerase recycling motor HelD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lpor
Limosilactobacillus portuensis
Pathway
lpor03420
Nucleotide excision repair
lpor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lpor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PRK60_08350 (helD)
03430 Mismatch repair
PRK60_08350 (helD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpor03400
]
PRK60_08350 (helD)
Enzymes [BR:
lpor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PRK60_08350 (helD)
DNA repair and recombination proteins [BR:
lpor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PRK60_08350 (helD)
MMR (mismatch excision repair)
Other MMR factors
PRK60_08350 (helD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C_2
Viral_helicase1
UvrD_C
DEAD
AAA_16
NACHT
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WCT61757
LinkDB
All DBs
Position
complement(1625347..1627635)
Genome browser
AA seq
762 aa
AA seq
DB search
MEQQRVDLVMKQIDKQIAETKKALADAHKETRAVEKNYSENASINRYEIDDIAESRAMIE
QQRQLVSRAAESETILRRQLKTLQNLKQTPYFGRIDIQDPGKDQPETLYIGTASLMNDDK
TAFLIYDWRAPISGVYYNGTLGEVRYETPNGIRETVLIKKRQFTIKDGRIVNMFDTNETV
GDELLQAALGEQNDQYMHNIVATIQQEQNDIIRDTHSDLLLVQGVAGSGKTSAVLQRIAY
LLYHSRTALNADQIVLFSPNRLFSHYISQVLPSLGERNMRQVTMSGFVRRRFEGLQVENI
FERYEKRQRASNQDRRIDDFLESQPAMNDIHRYATHLMDEQLQFSNITFEGRVFFTAEHI
QELYQKQPTAMKTANRMVQLKNKLIRELQRRVKEEAKKDWVAKELDSLDTQQLHNLYGKK
TIDDFRDEDEQYAYLAYRWAKRRLRIVADAIYNDYFIDIYSQYANWLRQLPLPEEIHREE
WRRMIDNYSNELEMHRLAMMHAAPLMYLRDLLMGSGQNHSFKYVFIDEMQDYSVAMMIYL
RHAFPGAKFTVLGDSEQALFKPLELPEQLLARLSKTLVAKHPNLISLRRSYRSTKEITDF
AKALLPDGDQIVSFTRHGQRPALLVRSSADAVEQALQDSVEKYHEQYETVAILTKDQEQA
QQVYRQLHRQFSNVHLLDMNDTELPSGILVLPVYLAKGLEFDSVIAYDVSQANLKGTDEI
GMFYTMATRAMHDLTMISNGQVSTAVNEKASQQLTIEHELIR
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atggagcagcagcgggtcgatttagtaatgaagcagatcgacaaacaaatagctgaaact
aagaaggcacttgctgatgcccataaggaaactcgagcggttgaaaagaattacagtgaa
aatgcctcaattaaccggtatgaaattgacgacattgctgaatcacgagcaatgatcgaa
cagcagcggcagttagtatcacgagcagctgaaagtgaaacgatccttcgccggcagtta
aagacactgcaaaatcttaagcagacaccgtatttcgggaggattgatattcaggatcct
ggtaaagatcaaccggaaacgttatatattggaacggcttcgctaatgaatgatgataaa
actgcctttctcatttatgattggcgggcaccgatttcgggtgtttactacaacggaacg
ttaggtgaggtgcggtatgaaacaccgaatggaattcgggaaacggtcttaattaagaaa
cgccaatttaccattaaagatgggcggatcgttaacatgtttgatactaatgaaacggtg
ggagatgaattactccaggccgctcttggtgagcaaaatgatcaatacatgcataacatt
gttgccacgatccagcaggaacaaaatgacatcatccgcgatacccatagtgatctctta
ctagtacaaggggttgctggatcggggaaaacttcagcagttttacaacggattgcctac
ctcctttaccatagtcgaaccgcattaaatgccgatcagattgtcctctttagtcccaat
cgactctttagccactatatttctcaagtcttaccgagccttggggaacgaaacatgcgt
caggtgacaatgtcaggttttgttcggcgccggtttgaaggtttacaagtagaaaatatt
tttgagagatatgaaaagcgtcaacgggcatcgaaccaagatcgccgaattgacgacttc
ttagaaagtcaaccggcaatgaatgatattcatcggtatgcaacccatctaatggatgag
cagcttcaatttagtaacattacttttgaaggacgggtctttttcactgctgagcatatt
caagaactctatcaaaaacagccaaccgcaatgaagaccgctaatcgaatggttcagtta
aagaataagttaatccgcgaacttcagcggcgagtaaaagaagaagcaaaaaaggactgg
gtagctaaggaacttgatagtcttgatactcagcaacttcataatttatacggtaaaaag
acgattgatgattttcgggatgaagatgagcaatatgcttaccttgcatatcgctgggca
aaacgacgactaaggattgtcgctgacgcaatttataatgactatttcattgatatttat
agtcagtacgcaaattggctgcgacagttgccattgcctgaagagattcaccgggaagag
tggcgacggatgattgataattatagtaatgaattagaaatgcaccgtttggcaatgatg
cacgcggccccgctgatgtacttgcgcgatttattaatggggagtgggcagaaccattcg
tttaagtatgtctttattgatgaaatgcaggattattcagtggcaatgatgatctacctg
cgtcacgcttttccaggagccaagtttactgttctcggtgatagcgaacaggcactgttt
aaaccattggaactacctgagcaattattggcacgtctgagcaaaacgctagtagctaag
catcctaatctaatttcgttacgccgaagctacagatcaacaaaggaaattacggacttt
gctaaagcgctgttgcctgatggtgatcaaatagtgtcatttacccgtcatgggcaacgg
ccagcgcttctggttcgttcttcagctgatgctgttgaacaggcgctacaagacagtgtt
gaaaagtatcatgaacaatatgaaacagttgcgatccttactaaggatcaggagcaagca
caacaggtttaccgtcaattgcatcgacaattttccaatgttcatttgctagatatgaac
gatacagaactgccgagtggaatcttagttcttcccgtttatctggctaagggacttgaa
ttcgattcagtgattgcctatgatgtttcgcaagcaaaccttaagggaaccgatgaaatt
gggatgttctacacaatggctactcgggcaatgcatgatctgacgatgattagtaatggg
caagtaagtacggcagttaatgaaaaggctagtcaacaactaacgattgaacatgaatta
ataaggtaa
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