Limosilactobacillus portuensis: PRK60_09450
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Entry
PRK60_09450 CDS
T08838
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
lpor
Limosilactobacillus portuensis
Brite
KEGG Orthology (KO) [BR:
lpor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpor03400
]
PRK60_09450
Enzymes [BR:
lpor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PRK60_09450
DNA repair and recombination proteins [BR:
lpor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
PRK60_09450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
WCT60762
LinkDB
All DBs
Position
1863401..1867177
Genome browser
AA seq
1258 aa
AA seq
DB search
MGTLGFVLGTRAMDHEQVMIDQLADQMKKASAEDRFFYLVPNHIKFETEINILAGLRKRM
GLDNDQRFASEKLQVLSFSRLAWFLLRDTPAFQTPRISKIGMTMLTSQVAQEYAKELHLY
ASEIKRPGFIQKMTEQLEELKGANISADDFSMILGQIQQDQSSGANRVWLTKMHDIEIIY
HAYEKQLQQNFLGNNELYSQLVKYLQTNKEVRHMHFFIDRFAQFTASEQQIIDALVENGA
TTMVSLVLDRGYPDQNHPSPSEIPAENDLFYSSAMVYRRLWKLAQQAPQQIKLQPNVWFA
THPRVNDDLQEVDHYFKRYAAGPISTTETSRLTAPSTVQFYTMANHREELEKVATKIRQM
VATGKYRYRDFLVLTRHLDGYQNMIAPIFAQNQVPVFDDHERKMDQHPLVILLSTLLSID
QRGYQLGDIMQLLKTWLLVPRLATGDLMPIKIFQEAVFTTENWCLKQAIRGKQDWIKPDL
WTVKDADDQREKATASRVEQLNQQLSIVHNYVTEIIVPFLSQLKKVESGQELATTLFNFL
QQNGVTERLYQWQQYQSTRDLDLARQPQQVWEKFCQILQEYVEILGKDRLDKDNINDYLE
KFNEIIQAGFSAAQYSQIPATLDQVVVSETGIVQSQNKKVVFMIGSTDDVMPEVRENDGL
LTDQDKQILAPYLDDDFQYLPADMITELNNEPFVHYLGMLSAKQQLIFTAPQATNDDKEL
TISPYMRDLAAYLQRPIINSPLVTSKVGRENAQQFISSPEASLSQLVRVGRQVRDDQKSI
ATPVQMPPAWKKVEQDLILLAKQWQLSPDAVDNALGKKLQQRLEMVNQGFNYHNVVDDIG
ATLAQALYLHATPNKSGQRVLYASISQLQNFYINQYEYFLKYGLQLQKRDRLEMSADRIG
TFFHKAMETFINNTRQQQVELKELVSNSQELRRFIDEALRTAEKSQPDLVRLTESSAQAK
FQYHQLRTIVTTMLETMCQQAQYTEARPFKTEAQFGRIGSPNQVNLKALDYPLASGNRIY
LRGRIDRIDRLPKEQLTDLLQPSDFLTVVDYKSSNHTFDLTSAYYGISLQLLTYLNGLQN
NLQELDEPTARLAGALYLHLSNPKFDWKRNQHKELEELQLSAHEYKGILLNEPAILDSLD
QKLQDNQSALYPLKVTKKGGISAKKDALLVTSDQLQWLQEWNKQLIVDAGDKILEGQVKL
NPYRLIEGSKRATGLDYSDFKDIYQFDNMLDQQRYRQLDPQKAKEDFDNAKKEGRTKE
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atgggaactctaggctttgttttaggcactcgtgcaatggatcatgaacaggtaatgatc
gatcaactggctgaccaaatgaagaaggcctcagctgaagaccggtttttctacttggtt
cctaaccatattaaatttgaaacggaaataaatattttagcagggttacgaaagcggatg
ggccttgataatgatcaacgctttgcctcagaaaagcttcaggtactatcctttagtcga
ttagcatggttcctcttacgtgatacaccagcatttcaaacgccacggatctctaagatt
ggaatgactatgttgacatcccaagtagctcaggagtatgcaaaagaactacacctttat
gcaagcgaaattaagcgaccgggttttattcagaaaatgacggagcaattagaagaatta
aaaggcgccaatatttcagcagatgatttttcaatgatactgggtcaaattcagcaagat
caatcatcaggagctaaccgcgtctggttaactaagatgcatgatattgagattatttac
catgcttatgagaaacaacttcagcaaaatttcctgggaaataatgaactttattcgcag
ttggttaagtatttgcaaactaataaagaagtccgtcacatgcacttctttattgatcga
tttgcacaatttactgcaagcgaacaacaaataattgatgctttagtagaaaatggggca
accacaatggtttcactagttctcgaccgggggtatcctgatcagaatcatcctagtccg
agtgaaattcctgctgaaaatgatttgttttattcctcagcgatggtttatcgacgtctc
tggaagctggctcagcaggctccacaacagattaaactccagccgaatgtgtggtttgca
acacacccgcgagttaatgatgatcttcaagaagttgaccattactttaagcgatatgca
gcaggaccaatttcaacaacagaaaccagccggttgacagctccttcgacggttcagttt
tatacaatggcaaatcatcgtgaagaattagaaaaagttgctaccaaaattaggcagatg
gttgctactggcaagtatcggtaccgagatttcttagttttgactcgtcaccttgacggt
tatcaaaacatgatcgcaccgatctttgcacaaaatcaggtaccggtttttgatgatcat
gagcgcaaaatggatcagcatccgcttgtaatcctattaagcacgttgcttagtattgac
caacgaggatatcaattaggggatattatgcagctgctgaagacgtggttattggtacca
cgattagcgactggtgatttaatgccaattaagattttccaagaagcagtctttaccacc
gaaaattggtgtttaaagcaggcaattcgcgggaaacaggattggataaaaccagatcta
tggactgttaaagatgccgatgatcagcgagaaaaagcaaccgcatcacgagtagaacaa
ttaaaccagcaattatcgattgttcataattatgttactgaaataattgtgccgttctta
agccaactaaagaaagtagaatcaggccaagagttagcaacgacgctgtttaacttcttg
caacaaaatggggttactgaacgactatatcaatggcaacaataccagagtactcgtgat
cttgatttggcacgtcagccgcaacaagtttgggaaaaattttgtcagattctccaagaa
tatgttgagattcttggaaaagatcgtctggacaaggataatatcaacgattatcttgaa
aaatttaatgagattatccaagccggattttcagcagctcaatactcccaaattccagca
acgcttgaccaagtggttgtttccgaaactggaattgtgcaaagtcaaaacaaaaaggtt
gtctttatgattggctcgactgatgatgtgatgccagaagtgcgcgaaaacgatggatta
ttgactgaccaagataagcagatcttagctccatatttagacgatgattttcagtactta
ccggctgacatgataacagagttgaataatgaaccatttgtgcattatttagggatgctt
tccgcaaagcaacagttaattttcacagcgccacaagcaaccaatgatgataaagagtta
acaatttcaccatacatgcgcgatttggctgcctatctccagcggccgattatcaattcg
ccactagtaactagtaaggttggcagagaaaacgcccagcagtttatcagcagtccggaa
gctagcttaagtcaattggtgcgtgtaggtcgtcaagtacgggatgatcaaaaatcaatt
gctactccagtccagatgccaccagcttggaaaaaagttgaacaggatttgattttatta
gcaaagcagtggcaactaagtccggatgctgttgataatgctttaggaaagaagcttcaa
cagcgcctagaaatggtaaatcaaggatttaattaccataacgttgtggatgatattgga
gcaacgttagcccaagccttatatcttcatgctactccaaataagagtgggcaacgggtt
ttgtatgcttcgatctcacagttgcaaaacttctacattaatcagtacgaatatttctta
aagtacggtttacaacttcaaaaacgggatcgtcttgagatgtccgctgatcggatcgga
acctttttccataaagcaatggagacgtttattaataatacccgtcaacaacaagttgaa
ttaaaggagttagtatctaattcacaggaactgagaagatttattgatgaagcgttgcgg
acggctgaaaaaagccagcctgatttagtccgactaacagaatcatcagcccaagcgaag
tttcagtatcatcagttacgaactattgtgacgacgatgcttgaaacaatgtgtcaacaa
gcccaatatactgaggcacgaccctttaagactgaagcacaatttggccgaattggcagt
ccaaaccaagttaatctgaaagcactagactacccattagcttctggaaaccggatctat
ttgcgtggccgaattgacagaattgatcgtctgcctaaggagcagctaactgatctcttg
cagccgagtgattttcttaccgttgttgattacaaatcaagcaaccatacctttgacctt
acatcagcatactatggtatttctttgcagctattaacctacttaaacggtctacaaaac
aatcttcaagaactagacgagccaacagcacggcttgctggggcattatacttgcactta
agtaatcccaaatttgattggaaacgaaaccaacataaggaattagaagagttacagtta
agtgctcatgaatacaagggaatcctcttgaatgagccagcgatcctcgactcgctcgat
cagaaacttcaagataatcagtcagccttatatccactaaaagttactaaaaagggtggc
atttctgctaaaaaagatgcgctcctagttacttccgatcagttgcaatggcttcaggaa
tggaacaaacaattaattgttgacgcgggggacaaaatccttgagggacaagttaaacta
aatccttatcggttgattgagggaagtaaacgggcaacgggactagactatagcgacttt
aaagatatttaccaatttgacaatatgttagatcagcaacgttatcgtcagcttgatccg
cagaaagcaaaggaagactttgataatgcgaagaaagaaggaaggactaaagagtaa
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