Legionella pneumophila Paris (serogroup 1): lpp0106
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Entry
lpp0106 CDS
T00209
Symbol
rnr_lidP
Name
(GenBank) hypothetical protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lpp
Legionella pneumophila Paris (serogroup 1)
Pathway
lpp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
lpp0106 (rnr_lidP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpp03019
]
lpp0106 (rnr_lidP)
03016 Transfer RNA biogenesis [BR:
lpp03016
]
lpp0106 (rnr_lidP)
Enzymes [BR:
lpp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
lpp0106 (rnr_lidP)
Messenger RNA biogenesis [BR:
lpp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
lpp0106 (rnr_lidP)
Transfer RNA biogenesis [BR:
lpp03016
]
Prokaryotic type
tRNA degradation factors
lpp0106 (rnr_lidP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
CAH11254
Pasteur:
lpp0106
LinkDB
All DBs
Position
112571..114751
Genome browser
AA seq
726 aa
AA seq
DB search
MSKKSKDPFYKREREKYAEPIPSREYIMEILDEYGRPMSRSKLFDKLDLSSESQQESLGF
RLKAMLRDGQIMQDRRGRFCLLQKINLLRGTVQGHPDGFGFFIPDDGSEDMVLSAKEMRA
VMHGDMVLAYQSGLDRRGRPEAKIHEVLEHANTTVVGRFFTDHGVNFVIPDSKRLTQDIS
IPQEFIGEAKNGQIVLVELIAYPNKRSQAIGRVIHILGEHMAPGMEIQVAIHAHGIPFEW
PDDVLAEVGKIPQQISEEQLKGRTDLRNLPFVTIDGEDAKDFDDAVYCYKKPKGGFQLYV
AIADVSHYVAKDSALDQEAARRGNSVYFPGKVVPMLPEALSNGVCSLNPHVDRLCMVAEL
SITQEGKISRSRFYRAVIHSHARLTYTAVGAWLEQGKTDEKHQALWPMLESLYDLYHILL
DTRRLRGAMDFETTETRIEFDENKKIKCIVPVIRNDAHKLIEECMLAANVATARFLEKAE
IPTLYRVHAAPEEDKITALRQFLGELGLSLGGGRKPGPKDFQRTMNMIGDRPEKHLIETV
MLRSLKQAQYVESNEGHFGLAYSAYTHFTSPIRRFPDLLIHRAIGHLLDNHPVYEFEYSH
EDMNRLGKHSSMTERRADEATREVITWLKCEYMQDKLGQVFKGRISAVTSFGIFVELDEI
YVEGLVHVTSLKNDYYTFDSAKHRLIGARGGQVYRLGDKMTVLVARVDLNERKIDFEPVE
DEVCNE
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaaaaaatccaaagatcccttttataagagggaacgcgaaaaatacgccgagcca
attccaagccgggaatacatcatggaaatcctggatgaatacggtaggccaatgtctcgc
agtaaactgtttgataaattggatttgagctctgagagccagcaggagtccttgggtttt
cgcttgaaggccatgttgcgtgatggccaaatcatgcaggacaggcgtggacgcttttgt
ttattacaaaaaattaatttattgcgtggaacggttcaaggccatcctgatgggtttgga
tttttcatcccggatgatggttccgaggatatggtgctctctgctaaagaaatgagggct
gtcatgcatggagatatggtgcttgcctatcaatctggattggatagaagaggaaggccg
gaagctaaaatccacgaagtcctggaacatgcgaataccacggttgtaggtcgatttttt
actgatcatggcgtgaattttgtcattcctgatagcaaacgtctgactcaggatatttca
attccccaagaattcattggcgaggccaaaaatggccaaatagtactggttgagttaatc
gcatatcctaacaagcgttcgcaagctataggcagagtaatccatattttgggtgagcat
atggctcctggtatggaaattcaggtagcaattcatgcccacggcattcctttcgaatgg
ccagatgatgttcttgcggaagtgggtaaaattccacaacagatttccgaggaacaatta
aagggtcgaaccgatttgcgtaatcttccttttgtaaccattgacggggaagatgcaaaa
gattttgatgatgctgtgtattgttacaaaaagcccaaaggcggcttccaattgtatgtc
gctatcgcagacgtcagtcactatgtggcgaaggattctgctttggatcaagaagcagca
agacgaggaaattcagtttattttcccggtaaagtggtgccaatgctaccagaagcctta
tccaatggtgtttgctcattaaatccccatgttgatcgcttatgtatggtggctgagtta
tcgattacccaagaaggaaaaatatcccgatcccgcttttatcgggcagtgattcattct
catgctcgtttgacctacacggcagttggggcatggttggaacaaggcaagacagatgaa
aaacatcaagccttgtggcctatgcttgagtctctttatgatttatatcatattctgctc
gatacccgtagacttagaggtgctatggatttcgagactacggaaactcgtatcgaattt
gatgaaaataagaaaataaaatgtatcgtgcctgtaatacgtaatgacgctcataaatta
attgaagaatgcatgctggcagcgaatgttgcaacagcaagatttttagaaaaggctgaa
attcctactttataccgagttcatgcggctcctgaagaggataaaattactgcattgagg
cagtttttaggggagctgggattgtcattgggaggggggagaaaacctggacccaaggat
tttcagcgtaccatgaacatgattggtgaccgaccagagaagcatcttattgaaacggta
atgctgcgttctttaaaacaggctcagtacgttgaatcgaatgaaggtcattttggtttg
gcctattccgcttacacgcattttacatcaccaatcagaagatttcctgatctattaatt
cacagagcaatagggcatttactggataatcatcctgtttatgaatttgagtatagccat
gaagatatgaatcgtttgggtaaacattcctcgatgacggagcgccgtgctgatgaagcg
acccgggaagtgattacctggctaaaatgcgagtatatgcaagacaaattggggcaggta
tttaagggtcgaatatccgctgtgaccagctttggtatttttgtggagcttgatgaaatt
tatgtggaaggcttggttcatgtcacttctttaaaaaacgattattatacgtttgattct
gcaaaacatcgtttaataggggctcgcggcggtcaagtttatcgtttgggagataaaatg
actgtgttggtagctcgtgttgatttaaacgaacgtaaaatagattttgagcctgtcgag
gatgaagtttgtaatgaatga
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