Lacticaseibacillus paracasei N1115: AF91_08495
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Entry
AF91_08495 CDS
T03050
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lpq
Lacticaseibacillus paracasei N1115
Pathway
lpq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AF91_08495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpq03019
]
AF91_08495
03400 DNA repair and recombination proteins [BR:
lpq03400
]
AF91_08495
Enzymes [BR:
lpq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AF91_08495
Messenger RNA biogenesis [BR:
lpq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AF91_08495
DNA repair and recombination proteins [BR:
lpq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AF91_08495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
Helicase_C
RecQ_Zn_bind
DEAD
HHH
TadB_TadC_N
Motif
Other DBs
NCBI-ProteinID:
AHJ33227
UniProt:
A0A806LIU7
LinkDB
All DBs
Position
complement(1707220..1708668)
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AA seq
482 aa
AA seq
DB search
MLYVAPERFDTDWFVQRLGSTDISLFAIDEAHCISQWGHDFRPSYLNLANVAAQLPSQPP
VIALTATATPRVAQDICQRLAIPADGMINTGFERSNLSFKVVRDQDEDRYLLDYLKLNVD
QAGIIYASTRKEVDRLYTFLAHKKLPVAKYHAGMSEAQRAANQEDFLFDRKPIMIATNAF
GMGIDKSNVRFVIHAQIPKDVESYYQEAGRAGRDGLPSEAILLFKPQDLQVQRFFIDQSE
GDDEHKQRQYEKLKMMERYANTDQCLQQFILNYFGQNGTKPCGRCSNCLDDRESVDVTVD
AQKVLSCVVRLHERFGKGVVAQVLAGAHNQRVLSFHLDQLSTYGLMSSRRQRDITTFIDF
LTAGGYLETRGGQYPTLGLTAKGAEVLRGQAQVFQKTAQKAEQHLEVDDTVFQELRSTRR
QLAEQQHLPPYMIFSDKTLKAIGSAMPQSLDELMAVKGVGQAKLDKYGQIFLDVLQAIKA
KA
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
ttgttatatgttgccccagaacggtttgacacggattggtttgtgcaacggcttggcagc
accgatatttcgttatttgcaattgatgaagcccattgtatttctcaatggggtcacgat
tttcgtccgagttatttgaatctggcgaatgtggcggctcaattgccttcacagccaccg
gtcattgccttgaccgcaacggctacaccgcgagttgcgcaggatatttgccagcgactg
gcgattcctgctgacgggatgattaatactggttttgagcgaagtaatctgagcttcaag
gtcgtacgcgatcaggatgaagatcggtatctactagattacctgaaactgaatgtcgat
caggcaggcatcatctatgccagcacccgtaaagaagttgaccgtttgtatacctttttg
gcacataagaagttgcctgtggccaaatatcacgcgggcatgagtgaagcgcagcgtgct
gctaatcaggaagattttttgtttgatcgcaaaccaattatgattgcaacgaatgcgttc
ggcatgggtattgataaaagcaacgtgcggtttgtcattcacgcccagattcccaaagat
gtcgaatcgtattatcaagaagccggtcgagctggtcgtgatggcttgccgagtgaggca
attttgctgtttaagccgcaagatctccaggttcagcggttcttcatcgatcaatccgaa
ggcgatgacgagcacaaacagcggcaatatgagaagctgaaaatgatggaacggtatgcg
aacacagatcagtgtttacaacagtttattttgaactatttcggtcaaaacgggacaaaa
ccatgtggtcggtgttcgaattgtttggatgaccgggaatcagtggatgttacggttgat
gcgcagaaggtcttatcttgtgtggttcgcttgcatgaacgttttggcaaaggcgttgtg
gcacaagtgctggcgggggcccacaatcagcgggtattgtcgtttcatttagatcaattg
tcaacttatgggctgatgagcagtcgtcgtcaacgcgacattacaacgttcatagatttt
ctgacagctggcggttatttagaaacccgcggtggtcagtacccaactctgggcttaacg
gccaaaggtgctgaggttcttcgcggacaagcgcaagtattccagaagacggcgcaaaaa
gccgagcagcatctcgaagtcgacgacactgtctttcaggaactgcgcagtactcggcga
caactggcggagcagcagcatttaccgccttatatgattttctctgataagacgttgaag
gcaattggcagcgccatgccgcaaagtcttgatgagttgatggcagtcaaaggcgtcggg
caggcgaagttggataagtatggccaaatctttttggatgtcctgcaggcgattaaggcc
aaggcttga
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