Lacticaseibacillus paracasei N1115: AF91_12455
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Entry
AF91_12455 CDS
T03050
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lpq
Lacticaseibacillus paracasei N1115
Pathway
lpq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AF91_12455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpq03021
]
AF91_12455
03400 DNA repair and recombination proteins [BR:
lpq03400
]
AF91_12455
Enzymes [BR:
lpq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AF91_12455
Transcription machinery [BR:
lpq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AF91_12455
DNA repair and recombination proteins [BR:
lpq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AF91_12455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
DUF4090
Motif
Other DBs
NCBI-ProteinID:
AHJ33932
UniProt:
A0A806LI96
LinkDB
All DBs
Position
complement(2424231..2427893)
Genome browser
AA seq
1220 aa
AA seq
DB search
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPERDGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRSLEEIIYFASYVVIDPGDTPMEKKQLLTEREYREKREEYGQTFNAKMGAEAIKELLQ
DVELDKEVAELKEDLKSAQGQKRTRAIRRLDILDAFKESGNDPAWMVMDTIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPWLKFYQCGVPRE
MALELFKPFVMRELVKRDMASNIKNARRKIDRQDDDVWDVLEDVIKERPVLLNRAPTLHR
LGIQAFEPVLVDGKSIRLHPLVCEAYNADFDGDQMAIHVPLSDEAMAEARMLMLAAHHIL
APKDGKPIVTPSQDVVLGNYYLTMEQKGREGEGMIFKDTNEVLMALQNGYVHLHSRIGIA
TNSFTDKPFTDDQKQKIMVTSVGKAIFNEIMPKDFPYLNEPTQDNIVNGVPDKYFIDKGE
DISDYLEDAPLIDPFKKGFLSDIIAQVFKVYKVQRTSDLLDDMKTLGYTQSTNSGLTVGI
ADITNLKEKPEIVEAAHKKVATVSKQFRRGLITDEERHDRVIQIWNDAKDDIQQKLVDSF
DPNNPISMMSDSGARGNISNFTQLAGMRGLMAAPNGGMMEVPVISNFREGLSVMEMFMST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLVVSAIREGNEMIEPLY
DRLVGRFTMKDVLDPKSGEVLVKRNTLMDEDTAQMIVDAGVESVTIRSVFTCNTKHGVCQ
KCYGRNMATGEQVEVGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGGEDITQGLPRVQEI
FEARNPKGEAVITEVTGEITAIDENPAEHTREITVKGETDTRTYSVPYASSVAVAEGDHI
NRGERLTGGSIDPKQLIKVRDVMATENYLLSEVQKVYRMQGVDIGDKHVEVMVRQMLRKI
RVMDPGDTNILPGTLLDIADFKEKNTQAIISGGIPATGRPVLLGITKASLETNSFLSAAS
FQETTRVLTDASIRGKNDPLIGLKENVIIGKIIPAGTGMATYRHEEPKSVGTVSDSVYSI
SDIEKQMKAKDGQQGDTDKK
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtcaataagtttgaaagtatgcaaatcggcttagcctcgccagataaaatc
cgtagctggtcctatggggaagttaaaaaacctgagaccatcaactaccggacgttaaaa
cctgagcgggacggcttgttcgatgaacgcatcttcggaccgaccaaggactgggaatgt
gcctgtggcaagtacaagcggattcgttataagggaatcgtttgtgatcgctgcggtgtt
gaagttactcgttccaaggttcgccgtgagcggatgggtcatatcgaactagccgcaccg
gttacccacatctggtacttcaagggcatcccaagtcggatgggtctggtactggacatg
tcaccgcggtcactcgaagagatcatttattttgcatcctacgttgtgatcgatcctggc
gatacgccgatggagaaaaagcagctcctgaccgaacgtgaatatcgtgaaaaacgcgaa
gaatacggtcaaaccttcaatgccaagatgggtgctgaagccatcaaggaattgttgcag
gatgttgagcttgataaagaagttgccgaattaaaggaagacttgaagtcagcccaaggc
caaaagcggactcgtgcgattcgccggttggatattctggatgccttcaaggaatccggt
aatgatccagcttggatggtcatggacacgatcccagttatcccaccggatctgcggcca
atggttcaacttgaaggtggccgttttgccacttccgatctgaacgacttgtatcgacgg
gttatcaaccgaaataatcggttgaagcgcctgcttgatctcaatgcgccaagtatcatt
gttcaaaacgaaaagcggatgctgcaggaagcggttgatgctttgattgataatggtcgt
cgtggccgtccggttacggggccaggtaatcgcccgctcaagtccctatcacacatgctg
aaagggaagcaaggccggttccgtcagaacttgcttggtaagcgtgtcgattactccggc
cgttccgttattgatgtcggcccatggctgaagttctatcaatgcggtgtaccacgtgaa
atggcattggaactgttcaagccatttgtgatgcgcgaattggttaagcgcgacatggct
agcaacatcaagaatgctcgtcgcaagattgatcgccaagatgatgatgtttgggacgtg
cttgaagatgtcatcaaggaacgtccagtgctgttgaaccgtgcacctaccttgcatcga
cttgggattcaggcatttgaacctgtccttgttgatgggaagtccatccggttgcacccg
ctggtctgcgaagcttataacgctgactttgatggtgaccagatggcgatccatgtaccg
ctatctgacgaagcgatggctgaagcacggatgctgatgttggctgcacaccatattttg
gcaccaaaagatggcaagccaatcgttacgccatcacaggacgttgtgctgggtaactac
tacctgaccatggaacaaaaaggccgcgaaggtgaaggcatgatctttaaggacaccaac
gaagtgttgatggccttgcaaaacggttatgtccacttgcacagccgcatcgggattgcg
actaattcctttacggacaagccgtttaccgatgatcagaaacaaaagatcatggtcacc
agtgttggtaaggcgatctttaacgagattatgccgaaagacttcccatatttgaatgaa
ccgacgcaggataacatcgtcaatggtgtgccggataagtatttcatcgataagggtgaa
gacatcagcgactaccttgaagatgcaccgttaatcgatccattcaagaaaggcttcctg
tctgacatcattgcgcaagtcttcaaggtctataaagttcaacggaccagtgacttgctg
gatgatatgaagactttgggctatacgcagtccactaactctggcttgactgtcgggatc
gcggacattactaacttgaaggaaaagcctgaaattgtcgaagctgcccataagaaggtt
gccactgtttccaagcagttccgtcgtgggttgattaccgacgaggaacggcatgatcgg
gttatccagatctggaatgatgccaaagatgatattcagcagaagctggttgattcgttt
gacccgaacaacccaatttcgatgatgtccgattcaggtgctcgtggtaacatttctaac
tttacacagcttgccggcatgcgtggtctgatggctgcgccaaacggtgggatgatggaa
gtgcctgttatctcgaacttccgtgagggcctgtccgtcatggaaatgttcatgtcaact
cacggtgctcgtaaagggatgaccgatacggcgctgaagacggctgattcaggttatctg
actcggcggctggttgatgttgcacaggatgtcattgttcgtgaagaggactgcggtacc
gaccgtggcttagttgtcagtgctatccgtgaaggtaatgaaatgatcgaaccgttgtat
gatcgactggttggtcgtttcaccatgaaggatgtgctggatccgaagagtggcgaagtg
ctcgtcaagcgcaataccttgatggacgaagatactgctcagatgatcgtggatgccggg
gttgaatccgtcacgatccgttcggtcttcacttgcaacaccaaacatggggtctgccag
aagtgctacggtcgtaacatggccactggcgaacaagttgaagtcggcgaagctgtcggg
actgttgctgcgcaatctatcggtgaacctggtacccagctgaccatgcggaacttccat
actggcggtgttgccggtggcgaagatattacgcaagggctgcctcgtgttcaggaaatc
tttgaagctcgtaaccctaaaggtgaagctgtgattacggaagtgaccggtgaaattacg
gcgattgacgaaaatccagctgagcacacacgggaaatcacggtcaaaggtgaaaccgac
acccggacttacagcgtgccatatgcttccagtgtggcagttgctgaaggcgaccacatt
aatcgtggcgaacgcctgactggtggttcgattgatcctaagcaattgattaaagtgcgc
gatgtcatggccaccgaaaattacctgctttctgaagttcagaaagtttaccgtatgcaa
ggtgttgatatcggcgataagcacgttgaagtgatggtccgccagatgctgcgcaagatc
cgggtcatggatccaggcgacaccaacatcttgccaggaaccttactcgatattgctgac
tttaaggaaaagaatacgcaggcaattatcagtggcggtatccctgctactggccggcca
gttctactggggatcaccaaggcttccttggagaccaacagtttcctgtctgccgcttcc
ttccaggaaacgacacgggtattgaccgatgcctcgattcgcggcaagaacgatccgctg
atcggtttgaaggaaaatgtcatcattgggaagatcattccggctggtaccgggatggca
acgtatcgacacgaagaaccaaagagtgtcggcacggtttccgacagtgtctattcgatt
tcagacatcgaaaagcaaatgaaagcaaaagacggccagcaaggcgatacggacaaaaag
taa
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