Lacticaseibacillus paracasei N1115: AF91_12635
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Entry
AF91_12635 CDS
T03050
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lpq
Lacticaseibacillus paracasei N1115
Pathway
lpq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AF91_12635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpq03400
]
AF91_12635
Enzymes [BR:
lpq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AF91_12635
DNA repair and recombination proteins [BR:
lpq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AF91_12635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
DUF7398
Motif
Other DBs
NCBI-ProteinID:
AHJ33948
UniProt:
A0A806LHK5
LinkDB
All DBs
Position
complement(2459734..2463258)
Genome browser
AA seq
1174 aa
AA seq
DB search
MNLIDMVQADPALSALWPKLKTGRHLVTGLSGSAKTVFFGALLQQRPQQILIVENNRFHA
DELAADLSSLLGDAVVYDFPVEDVLAAEVAVSSPETRNDRINALTFIQSGKPGIIVSSLA
GYKRLLPSPADWAASELAIDMTSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDV
YPLNQDDPIRIELFDTEIDSIRSFDIATQRSLQKLQQITIAPATDMVATDQVLAAAGERI
TKQANAYKAKVKNAAAKQAVTDGLLTTGQQLSAHERPENLALYAAELYPEQQRISDYLQP
DALVAFDDYSRLLDSDTTLVQDTAEWYSQLQEEGRLLPNTPNLTIQELAQQDKRPRLYLS
LFQKGMGQLRLDSLTNIPSRNVQQFFSQMPLLKTETDRWVKQQQTVVFLITDKNRLEKLS
ETLSDFEISNVMTAPTKLLPSQVQLTEGSLKNGFELPDLKLVVVTEHELFNARQRRHARH
QTLANTERLRSYNKLKPGDYVVHVNHGIGQYTGMETLEVDGVHRDYITIVYRNNDKLFIP
VDQLNLVQKYVSADGKTPSVNKLGGAEWQKTKRKVAARIEDIADELIDLYAKREAEKGFA
FGPDDDLQHKFEAEFPYPETPDQLRSAKEIKHDMEKPKPMDRLLVGDVGFGKTEVALRAA
FKAIDYGKQAAILVPTTILAQQHFDTMKERFADFPIKVGLLSRFQTPHQNKETIKGLKNG
TIDIVVGTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRT
LNMSMLGVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDM
ERTVSQLEELVPDASVGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANT
LIIENADHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSG
FKIAMRDLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNKRRGIKSAEKTDAEIDLG
LEAYLPTDYVADSRQKIELYKRIREADSDEAETEISEDLIDRFGDYPQPVTNLLAIAHLK
RFADLAWVNHVTKAGQKLTVVLSPQATAKAQGEPIFKALSATTLKAQVAITDGKLTVTLA
LPKDMKTATWLDQLTGFLQGLLTVVNPQPEKKSA
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaatttgatcgacatggtgcaggcagatccagcattgtcggcattatggccgaagctg
aaaacgggtcgccatttggtgacaggactgtcgggctcagccaagacggtcttttttggc
gcgctattgcaacagcgaccgcagcagattctaattgttgaaaacaatcgctttcatgcc
gatgaattagctgctgatttaagcagtttgctcggagatgcagtggtttacgattttcca
gttgaggatgtgttggcagctgaagtcgcggttagttcgccagagacgcgtaacgatcgt
attaatgctttgacgtttattcaaagcggcaaacctggaatcatcgtatccagtctggcc
ggttataagcggcttttgccgtcaccagccgattgggcagctagtgaattggccattgat
atgacttccgagcttgatccgcaaaccgttgccaaacagctggtcgccatgggctatcga
cgtgattcgttagtcagcgcgccgggacagtttgccattcgcggcggcatcattgacgtc
tatccgttgaatcaagacgatccgattcgaattgaattgttcgatactgaaatcgattcc
atccgcagctttgacattgccacccaacgtagtctgcaaaaacttcagcagatcacgatt
gcgccggcaaccgatatggtggcgactgatcaggttttggccgctgctggcgagcgcatt
accaagcaagctaatgcctacaaggcaaaagtgaaaaatgccgccgctaagcaggccgtt
acagatggtttattgacgactggccagcagctatcggcacacgagcgtcctgaaaatcta
gctttatatgcggccgaactatacccagagcagcaacgcatcagtgactatttgcaacca
gatgcactggtagcattcgatgattacagtcgtttgctagatagcgatacaaccttggtg
caggatacggcagaatggtactcacagttgcaagaagaaggccggctgctacctaacacg
ccgaacctgacgattcaggaacttgcacagcaagataagcgcccgcggctttaccttagc
ctttttcaaaaaggcatggggcagttgcgacttgacagcttgaccaatattcccagccgt
aacgtgcagcaatttttcagtcagatgccgttactcaaaacagaaaccgatcgctgggta
aagcagcagcaaaccgtggtgttcttgatcacagataaaaatcggctggaaaagctgagc
gaaacgttgtcagattttgagattagcaatgtcatgacagccccgactaagctgttgcca
agccaggtgcaattgacagaaggcagcctgaaaaatggcttcgagctgcctgacttgaaa
ttagtcgttgtgaccgagcacgagttattcaatgctcgccaacgtcgtcacgcacggcac
caaacactggcgaatacagagcgattgcgaagctataacaagctcaagcctggtgactac
gtggtgcatgttaatcacgggatcggtcaatacaccgggatggagacattagaagttgac
ggtgtgcatcgtgattacattacgattgtttaccgaaacaacgataagctgtttattcca
gttgaccaactgaatctagtccaaaaatacgtttcagcagatggcaaaacgccaagcgtc
aataaacttggtggtgctgagtggcagaaaaccaaacgcaaagtagctgcccgaattgaa
gatatcgctgacgaattaattgatttatatgccaagcgtgaagcggaaaaagggtttgca
tttgggccggatgatgacctgcagcacaagttcgaagcggaatttccttatcctgagaca
ccggaccagttgcggtcagccaaagaaattaagcatgatatggaaaagccgaagccaatg
gatcgcttattggttggcgatgttggttttggcaaaaccgaagtcgcgttgcgtgcagct
ttcaaggcaatcgattatggcaaacaggcagccattttggtgccgacaacgattttagcc
cagcaacactttgacacgatgaaagaacggtttgcggactttccaatcaaagtcgggttg
ttgtcacgattccagacaccgcatcagaacaaggaaacgatcaaaggacttaagaacggc
accattgatattgtcgttggcacccatcggctgttgtctaaagatgtcgcttttcgggat
ttgggattgctggtcattgatgaggaacagcgctttggcgttaagcataaggaacggatc
aaacaactcaagagtaatgtcgatgtgctcacgctgacggcgactccgattccaagaacg
ttgaacatgtccatgctaggcgtgcgtgatttgagtgtcattgaaacgccgccaacgaat
cgctatccgattcaaacctttgtcatggaacaaaatccaggcgtgattcgcgaagccatt
gaacgggaaatggaacgcggcggtcaagtcttttacctgcataaccgggtggaagatatg
gaacgtaccgtgagtcaactggaggaactggtgccagatgcaagtgtcggatatgcgcat
ggtcagatgactgagacgcagttggagaacgtcatttatgactttttgcacggtgcttac
gatgtgctggtgaccacaaccattattgaaactggcgtggacatgcccaatgccaatact
ttaatcatcgagaatgccgatcattacggcctgtcacaactttatcaattgcgcggccga
attgggcggtcaagtcgagtcgcttatgcgtactttatgtatcagccgatgaaggtgctc
aatgaagttgctgaaaagcggcttcaggcgattaaagactttacggaattgggtagcggc
ttcaaaattgcgatgcgtgatctatcgattcgcggagctggcaacctacttggcaagcag
caacatggcttcatcgattcggtgggctatgatctttacacccagatgctgcaagaagct
gttaacaaaaggcgcggtattaaatcagctgagaaaacggatgctgaaattgatctgggt
ctggaagcatacctgccaactgattatgtggccgattcccgtcagaagatcgagttgtat
aaacgcattcgagaagcagatagcgatgaagccgaaactgagatcagcgaagatctgatt
gatcgttttggtgactatccgcaaccggtgaccaatttattggcgattgcgcatctcaag
cggtttgctgacttggcttgggtcaatcacgtaacgaaggcggggcaaaagttgacggtt
gtgttgtcaccgcaagcaactgctaaagcacaaggcgagccgattttcaaagcgttaagt
gcgacaacattgaaagcgcaggtcgcgatcacggatggcaagctgacagttacgttagca
ttgccaaaagatatgaagactgcgacttggcttgatcaattgaccggctttttgcaggga
ttactgactgttgtcaatccgcaaccggaaaagaaatcggcatag
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integrated database retrieval system
