Lactiplantibacillus plantarum subsp. plantarum P-8: LBP_cg0410
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Entry
LBP_cg0410 CDS
T02670
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lpr
Lactiplantibacillus plantarum subsp. plantarum P-8
Pathway
lpr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBP_cg0410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpr03019
]
LBP_cg0410
03009 Ribosome biogenesis [BR:
lpr03009
]
LBP_cg0410
Enzymes [BR:
lpr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LBP_cg0410
Messenger RNA biogenesis [BR:
lpr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LBP_cg0410
Ribosome biogenesis [BR:
lpr03009
]
Prokaryotic type
rRNA helicases
LBP_cg0410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AGL63156
LinkDB
All DBs
Position
423200..424786
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AA seq
528 aa
AA seq
DB search
MKFTELGLSDSLLKAVNRAGYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPIL
QRLDFDNHNIQALVVSPTRELAIQTQEEIFRLGKDERAKVQVVYGGADIRRQIRNLKQNP
QVIVGTPGRLLDHIRRGTVKLDHVKMLVLDEADEMLNMGFLEDIESIIKQVPDERQTMLF
SATMPPEIKRIGVQFMKEPHHVKIKSKEMTADTVDQYYVKAKEFEKFDIMTRLFDVQAPE
LTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFKAGKLDILVATDVAA
RGLDVSGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSLTFVTPNEMEYLRVIEKLTKK
RMLPLKPPTESEAFAGQLAAAEANVDSLVAKTSTEKYADQAAELLQKYDATDLVAALLND
LTKDDASAVPVKITPERPLPRHKGGGGNNRRGGYRGGNRNRNNSHGNGRGGYSHNGRNRD
RDRNGGRGDRKSNGYKGRSRDDNRSSNRNHDEGRKQSSKRSYTIRTND
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttacagaactaggcttatccgatagcctacttaaagcagttaatcgggccgga
tacgaagaagcgaccccgattcaagccgaaaccattccaatggttctagaaggcaaagat
gtgattggtcaagcacaaaccggtactgggaagaccgccgcgtttgcattaccaatctta
caacgcttggattttgataaccataacattcaagcattagttgtttcaccaacgcgtgaa
ttagcaatccaaactcaggaagaaatcttccgcttaggtaaagacgaacgggcgaaagtc
caagtcgtttacggtggtgctgatattcggcgccaaatcagaaatctgaagcaaaaccca
caagtaatcgtcggaactcctggccggttgcttgaccacattcgtcggggcacggtcaag
ttagaccacgtcaagatgttagttcttgatgaagctgacgaaatgttaaacatgggtttc
ttggaagatatcgaatcaattatcaaacaagtgccggatgaacgccaaactatgttgttc
tccgcaacgatgccacctgaaatcaaacgcattggtgtgcagttcatgaaggaaccgcat
cacgttaagatcaaatcaaaagaaatgactgctgatacggtcgatcaatattacgttaaa
gccaaagaatttgaaaagttcgatattatgacccggttgtttgatgttcaggcacctgaa
ctcacaatcgtgtttggtcgaacgaaacgtcgagttgacgaattatcaaagggtctcgaa
gcacgtggttataatgccgctgggattcatggtgatttgagccaacaacgtcggacgcaa
atcatgcgtcaattcaaggctggtaaattggatattttggttgcaaccgatgtggctgct
cggggacttgatgtttctggtgtgacccacgtttacaattacgatattccacaggatccg
gacagttatgttcaccggattggccgtactggccgtgccggacacaagggtgtttcatta
acttttgtaacaccaaacgaaatggaatatttgcgggtcatcgaaaagttgaccaagaag
cggatgttaccattgaagccaccaactgaatctgaagcttttgctggccaattagctgct
gcagaagcgaatgttgattcgttagttgctaagacttcgactgaaaagtatgctgatcaa
gctgctgaattattacaaaaatacgatgctactgatctagttgctgccttgttaaatgac
ttaactaaggacgacgcctcagccgtacccgttaagattacgccagaacgcccattacct
cgtcacaaaggtggcggcggtaacaaccggcgtggcggatatcgtggcggtaatcgcaac
cgcaataacagtcatggcaatggtcgtggcggttattctcacaatggtcgcaatcgcgac
cgtgatcgtaacggtggccgtggcgatcggaagagcaatggttataaaggtcgcagtcgc
gatgataaccggagcagcaaccgcaaccatgatgaaggtcgcaagcaaagcagcaagcgg
agctatacgatccgcaccaatgattaa
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