Lactiplantibacillus plantarum subsp. plantarum P-8: LBP_cg0432
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Entry
LBP_cg0432 CDS
T02670
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lpr
Lactiplantibacillus plantarum subsp. plantarum P-8
Pathway
lpr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LBP_cg0432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpr03400
]
LBP_cg0432
Enzymes [BR:
lpr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LBP_cg0432
DNA repair and recombination proteins [BR:
lpr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LBP_cg0432
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
SNF2-rel_dom
Cas3-like_C_2
AAA_22
MFD_D3
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AGL63178
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All DBs
Position
448855..452382
Genome browser
AA seq
1175 aa
AA seq
DB search
MDIETIVEQTPDFQTILAGINPRSRQLITGLNGSARTVYLSALFHQLTHSLLIVTDNGFH
ASQLVDDLTSLLDEDQVFLFPAEEMIATEVATSSPESRAQRVQALNALLRDSPAVVVTSV
AGARRFLPPVAQFQAATLPVAVGQDIDLEDLQRQLHDMGYVKEKLVARPGDFAVRGSIVD
IYPLDADYPLRLDFFDTEVDTLKYFDPETQRSVENLDEYTILPATDFILTSAMLQAGAQR
LKTAIAAENKKLKPAERQTLADNLAQPLADMEKGIIGNDLLLYGDYLYDRKTSIFDYVAA
DGLVIFEEYSRLLDSEQQLLTQEADWVTDQLAHHRVLATASYGNDIRDLLRDDQHAQLLI
SLFQKGIGNVKLAQVTNVRTRPMQEFFGQLPALKTELDRWHKLKQTVVLMVSEAERLTKV
SDTLDDFEIEAVMTKATNLQPGAVQIVQGSLQNGFEFPDGKLVIVTEQEMFKKVAKKRPR
RQTLANAERLKSYTDLKPGDYVVHVNHGIGKYVGMETLEVDGVHQDYITIAYQNNAKIFI
PVTQLNLVQKYVSSESKTPRINKLGGTEWTKAKRKVAAKIEDIADELVDLYAKREAEKGY
AFPPDDSYQDDFDNDFPYPETPDQIRSINEIKHDMERPKPMDRLLVGDVGYGKTEVALRA
AFKAIEAGKQVAFLVPTTILAQQHYETMLNRFEGYPINVGMLSRFRTTKEMKETVQQLKS
GEIDIVVGTHRLLSKDVAFADLGLLIIDEEQRFGVKHKERLKALKASVDVLTLTATPIPR
TLHMSMLGVRDLSVIETPPTNRYPIQTYVMEQNFGVIKEGIEREMQRNGQVFYLHNRVHD
IDKVVAQIKDLVPDAAVAHIDGQMPESQLEGILYDFIRGEYDVLVTTTIIETGVDIPNVN
TLFVENADRMGLSQLYQLRGRIGRSSRVAYAYFTYQQNKVLTEVGEKRLQAIKDFTELGS
GFKIAMRDLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLSEAVAKKRGQAAKVKTDATVEL
GIEAYLPTSYIEDERQKIEIYKRIRQLENNDQYMEVQDDLMDRFGDYPVEVAGLLAVGKL
KLLADDALIEKIQRDDSELHLTLSKQGTAKLDTKDIFKALAKTKLKATVGIDDDKMKVKL
VIQPKMQQDEWLAQLTQFVEQLSLILAEDDVASTS
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggatattgaaacgattgttgagcaaacgcccgactttcaaacaattttagcaggtatc
aacccgcgtagtcggcaactaatcaccggattgaacggttcggcacgaacggtttattta
agcgcgctatttcaccaattaacgcattcattactgatcgtgaccgataacggttttcac
gcgagtcagctagtggatgatttaacgagtctcttagatgaagaccaagtttttttattc
ccagctgaagaaatgattgcgacggaggttgcgacaagttcaccagagtcacgagcgcaa
cgagtccaggctttaaacgccttattgcgtgacagtccggcagtggtcgtgacctcggtt
gcaggtgcccggcggttcttgccgcccgtcgcacaatttcaagcagccacgttaccggta
gccgttggtcaagatattgatttggaagacttgcagcgacaactacacgacatgggttac
gttaaggaaaagttagtcgcacgcccaggagattttgcggtacggggctcaatcgtggat
atttacccgttagatgcggactaccctttacgactggacttctttgatactgaagttgat
acactgaagtattttgacccggaaacgcaacgttcggtggaaaacttggatgagtatacg
attttaccagctaccgactttatcctaacatcagctatgctgcaggccggggcacagcgt
cttaaaacggcgattgcggctgaaaataagaaactcaagccagccgaacgccagactttg
gccgataatttagcacaacctttagctgacatggaaaaaggaattatcggaaacgattta
ttattatatggcgattatttatacgaccggaaaacgagtatttttgactatgtggccgct
gacgggctcgttatcttcgaagaatattcgcgtttgcttgatagtgagcagcagttatta
acgcaagaagctgactgggttacggaccaattggcacatcaccgggtgctggcaactgcg
agttacggcaatgatattcgggatttgctccgggatgaccaacatgcacaactcttgatt
tcgctgtttcaaaagggcatcggcaacgtcaaactagcgcaagtaactaacgtgcgcaca
cgcccgatgcaggaattttttgggcagctcccagcgttgaagaccgaactggatcggtgg
cataagcttaaacagacggtggtcttgatggtatcagaggctgagcgtctgacaaaggtc
agtgatacgcttgatgattttgaaatcgaagcggtcatgactaaggccactaatttacaa
ccgggtgcggttcaaatcgtgcaaggtagcttgcaaaatggatttgagtttccggatggt
aaattagtcatcgtaaccgagcaagaaatgttcaagaaggtggctaagaagcgtccacgt
cgtcagaccttggctaatgccgaacggttgaagagttatacggatctcaaacccggcgat
tacgtcgtgcacgtcaatcacgggatcggaaagtacgttggtatggagacgctggaagtt
gatggtgtccatcaagactacattacgattgcgtatcaaaataatgcgaagatctttatt
cccgtgacccagttaaacctagttcaaaagtacgtttcgtcagaatcaaagacgccacgc
atcaataagttgggtggtaccgaatggacgaaagcgaagcgcaaagtcgcggcgaaaatt
gaagatatcgcggatgaactagtcgacctgtatgccaagcgagaggcggagaaaggttac
gcctttccaccggacgatagttatcaagatgatttcgataacgattttccgtacccagag
acgccggatcaaattcgtagtattaatgaaatcaagcatgatatggaacgaccgaaaccg
atggaccgcctattggtcggcgatgttggttatgggaagacggaagtcgcgttgcgggcc
gcgtttaaggcgattgaggccggcaaacaagtggcctttctagtgccaacgaccatttta
gctcagcaacattatgaaacgatgctgaatcggtttgaaggctatccgattaacgttggc
atgctgtcacgattcagaacaactaaggaaatgaaagagacggtccaacagttaaagagt
ggtgaaattgacatcgtggttggtacgcaccgcttactatctaaggacgtcgcgtttgct
gatctgggcctgctcattattgatgaggaacaacggtttggggtcaagcacaaggaacga
ctgaaggccttgaaggctagtgtggatgtcttgacgttaacggcaacgccgattccgcga
acattacacatgtcgatgctcggtgtacgggacttatcagtgattgagacgccgccaacg
aaccgttatccgatccaaacgtacgtcatggaacagaattttggcgtcattaaagaggga
attgaacgagaaatgcaacgtaatgggcaggtcttttatttgcataaccgggttcatgat
attgataaagtcgttgcacagatcaaagacttggttcccgacgcggcggtggcccatatt
gatggtcagatgcctgagtcacaactcgaagggattctctacgatttcattcggggtgag
tacgatgtgttagtgacaacgacgatcattgagaccggggttgatattccaaacgtcaac
accttatttgtggaaaatgctgaccggatgggactgtcacagctataccagttgcgtggc
cggattggtcggagtagtcgggtcgcctatgcttactttacttatcagcaaaataaagtt
ttgacagaagttggtgagaaacggttacaggccatcaaggactttacggaacttggatct
ggctttaaaatcgcgatgcgcgacttgtcgattcggggtgctggtaacttgttaggtaag
caacagcacggctttattgactcagttggttatgacctctatacccagatgttgtcagaa
gcagtggcgaagaagcgtggtcaggcggctaaagttaagaccgatgccacggtcgaactt
ggaatcgaagcctacttgccgaccagctatattgaagatgaacggcaaaagatcgaaatt
tataaacggattcgccagctggagaataatgatcagtacatggaagttcaggatgattta
atggatcgatttggtgattatccggtagaagtcgctggactattagcagtaggtaagctg
aagttactggcggatgacgcgctgattgagaagattcagcgtgacgatagtgagctacac
ctaacgttatccaaacaagggacggctaagctagatactaaagatatttttaaggccttg
gcaaaaacaaaattaaaagcgacagttggaattgatgatgataaaatgaaggttaaatta
gtcattcagccaaagatgcaacaggatgagtggctggcgcaattaacacagtttgtcgaa
caactgagtttgatcttagccgaagacgatgtcgctagtacgtcttag
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