Lactiplantibacillus plantarum subsp. plantarum P-8: LBP_cg1466
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Entry
LBP_cg1466 CDS
T02670
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lpr
Lactiplantibacillus plantarum subsp. plantarum P-8
Pathway
lpr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBP_cg1466
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpr03019
]
LBP_cg1466
03400 DNA repair and recombination proteins [BR:
lpr03400
]
LBP_cg1466
Enzymes [BR:
lpr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LBP_cg1466
Messenger RNA biogenesis [BR:
lpr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LBP_cg1466
DNA repair and recombination proteins [BR:
lpr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LBP_cg1466
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
HEM4
Helicase_C_2
AAA_22
AAA_30
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AGL64212
LinkDB
All DBs
Position
complement(1521024..1522463)
Genome browser
AA seq
479 aa
AA seq
DB search
MSEDELYELLKTKYGFDEFRPGQLAVIQKLLAGQDVLAVLPTGTGKSLIYQLVGTALPGL
VVVVSPLISLMQDQVARLNYQGEKQVAALTSQLDYGARQYLLNHLGQLKFLFISPEMLGQ
DIIQTALMQVQLALLVIDEAHCISTWGPDFRPDYRRLGQIRQRLQAPTTLMLTATATQRV
RQDILTQLTVPDAQQILYSVNRPNIYLAVEQVNDEASKRATLQHLVTSARGPVIVYFTSK
RQTDLIAEWLRTTTTLRVAAYHAGLATDDRFKIQQQFMAGQLDVICATSAFGMGINKADI
RLVIHYHLPTTLADYVQEIGRAGRDGQQAMAIMLYAPGDENLVRNLNELTAATPNEIQQD
YSRYQAQQPPTDDRSKVLQSYWLQGTPPTTVATIFADRQVAKERELRALMSYVQTTTCHR
TVMLTYFGEPAVTHTDQCCQLAGEPLPLAALGLMATHDEPTATIMSWDQHLAQLFLPNS
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagatgaattatatgagctgttgaaaacgaaatatggcttcgatgaatttcgc
cccgggcagctagccgtcattcagaaattattagcaggtcaagatgtcttggcagtgtta
ccaactgggaccggcaaatcattgatctatcaactcgtcgggaccgcactgcccgggcta
gttgtggtggtttcaccgctgatttccttgatgcaagatcaggtggctcgcttaaactat
caaggcgaaaagcaagttgctgctttgacctcccaactagattatggtgctcgccagtat
ctgttgaatcatttagggcagcttaaattcttgttcatttcgccggaaatgttgggtcaa
gacattattcaaacagcgctgatgcaagtgcaactggcgttattagttatcgacgaggcc
cactgcatttcaacttggggaccagattttcgccctgactaccgtcgccttggtcaaatt
cgacaacggttacaggcaccgacaacgctaatgctcacggcaacggctacacaacgcgtt
cgacaagatattttgacacaattaaccgttccagatgcccagcaaatcttatattcggtt
aatcgtcctaatatttacttagcagtcgaacaggtcaatgatgaagctagtaaacgcgcg
accttgcaacatttagtgacaagtgcgcgcggaccagtcattgtttactttacttccaag
cggcaaactgatttgatagcggaatggctacgaacgacaaccacgttacgggtcgcggct
tatcatgccggcttagcgactgatgaccgtttcaagatccagcagcagttcatggcagga
caattggatgtgatctgtgctacatctgcttttggaatgggtatcaacaaagctgatatt
cgcttagtgatccactatcatttaccgacgactttggccgactatgttcaagaaattggg
cgcgcaggtcgtgatggtcagcaggcgatggcgattatgttgtacgcaccaggtgacgaa
aacctggtgcggaatttgaacgaattgacggctgcgactcccaatgaaattcagcaagat
tatagccgttatcaagcgcagcagccaccgactgatgatcgtagtaaggttttgcagtca
tactggctacaaggaactcccccaacgaccgtggcaacgatttttgctgatcgccaagta
gctaaggaacgagaattgcgggcgctcatgagttacgtccaaacgacaacttgtcatcgg
accgtgatgttaacttactttggtgagccagctgttacccatacagatcagtgttgtcag
ttggctggtgaaccactaccgctggctgcgttagggctgatggcgacgcatgatgagcca
acagccacgataatgtcgtgggatcagcacttagctcaattgtttttaccaaattcttaa
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