Lentisphaera profundi: PQO03_03415
Help
Entry
PQO03_03415 CDS
T08820
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lpro
Lentisphaera profundi
Pathway
lpro03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PQO03_03415 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpro03400
]
PQO03_03415 (mfd)
Enzymes [BR:
lpro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PQO03_03415 (mfd)
DNA repair and recombination proteins [BR:
lpro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PQO03_03415 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WDE97009
LinkDB
All DBs
Position
1:812861..816049
Genome browser
AA seq
1062 aa
AA seq
DB search
MFDSFTADFEKVLNHISPSQSLKIADLELTSLAIMSQIKNVDHAICVFETSAQAESILNE
LKKYQSLAQLSDIKLLHYPELNSDQVEYDIDLERSRTLNSMLESIAEKTLLLSSVASLLS
AVVPPDKLNSQSVEIALKSEAFSPEILCELFTKMGFDNEVQVSLPGEFSLRGGILDVFSP
DQKLPVRIEFFDNEIESLRLFDVDSQKSIAEMKSYQISPVEKTGLEDRGFLDYCRDYELI
IVNDVAIEKHLQRFQSQAKQDFWGELKTSLSIHTNIDQDPESGIKDFPLVALAPIYRNSL
PEVERTIQQAHQKFLLDRVKSWLDKSWQVHILCGSEAGKQRLEEVFDDKQGDNLKLYPQS
LHYGFIIPEIKCAFLSEQELFGRPIEDLKDVSYSSQLQKNLEYEPELNEGDFAVHANHGI
CRYLGIEIKNGQEFLLLEFAEDRKLFLALDSSNLLMRYIGGKKSMPKLARLGTSFWQKSL
DKAKDSARDYAAELLRLQAAREHSRGTIFSKDTHWQNLFEESFPFEETPDQLTSIEEVKA
DMEKPKPMDRLLCGDVGFGKTEVAMRAAFKAVMDSYQVAIIVPTTVLAQQHFHSFSKRMA
DYPIKIATLSRFISKKEQKKVLIAMANGEVDIVIGTHRLLQKDIIFKKLGLLVIDEEQRF
GVESKESLKRMRVNVDILSMSATPIPRTLYLSMTGLRDFSTILTAPHNRKPVRTIVSKEN
DELIEMAISRELERGGQVYYLHNRVGTIDKVALKLKRMFPEAGILVGHGQMDEEELEMVM
NEFTDGDAQILVCTTIIESGMDIRNANTMIIDRADRFGLSSLYQLRGRVGREHRQAYCYL
LMPADEAIMDNAKERLSALRKHTHPGAGFKLAMRDLEIRGAGNMLGSQQSGHIAAVGFEL
YCQLLKKSVADLKGTVKQLTTASFNADFIHNGFQAVEGAISVALPPTYIESDDTRLEMYK
RFSTMTTYQEVMNLETELKDRFGAFTEEVIAYISSQKIKFLATALGFYSAEIKKGLFYLE
GADGLFRMSRKIPQIKKQGLAALKEAEQFLLNLAKRQKVKLL
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgtttgattcctttactgcagattttgaaaaagttctcaatcatatatcaccaagtcaa
tcacttaaaattgcagatcttgagctaacgagtttagcgatcatgagtcaaatcaaaaat
gtcgatcatgcgatctgtgtttttgaaacttctgcacaggcggaatcaatattaaatgaa
cttaaaaaatatcagtcattagctcaattaagtgatattaaactactccattatcctgaa
ctcaattcagatcaagtcgaatacgatattgacttagagcgctctcgaacattaaatagt
atgctcgaaagtatagctgaaaaaactttgttactttcttccgttgcgtcattactaagt
gcggtagttcctcctgataagctgaattcacaaagtgttgagatagctctaaaatcagaa
gcattttcccctgaaattctttgtgaattatttaccaaaatgggttttgataatgaagtt
caagtgagcttgcccggagagtttagcttacgaggagggatactggatgtattttctccc
gatcaaaaattacctgtacgaatcgagttttttgataatgaaattgaatcacttcgactt
tttgatgtagactctcagaaatcaattgcagaaatgaaatcttatcaaattagtcccgtt
gaaaaaacgggcttggaagatcgtggttttttagattactgccgtgattatgaactgatt
attgttaatgacgtcgcaatagaaaagcatctacagcgcttccaaagccaagcgaaacaa
gatttttggggagagttaaagacttctttgtctattcatacaaatattgatcaggaccct
gagagtgggataaaagattttcctttagttgctttagcacctatatatcgcaactcattg
cctgaagtcgagcgcacgattcagcaggcacatcagaagtttttacttgatagagtgaaa
tcgtggttggataaatcatggcaagtgcacattctctgtggaagtgaagcaggcaagcag
cgcttagaagaagtttttgatgataagcaaggggataatttaaagctctatccgcaatca
ttgcactacggtttcattattcctgaaatcaaatgtgcctttttaagtgagcaagagtta
tttggtcgacccatagaagatcttaaagatgtttcttattcatcacaactccagaaaaat
ttagaatatgagcctgaattaaatgaaggggattttgctgttcacgcgaatcatgggatt
tgtcgctacttgggaatagagataaaaaatggtcaggaattcctcctattagaatttgcg
gaggatcggaaattgtttctcgccttagattcatcgaatttattgatgcgctatatcgga
ggaaaaaaatccatgcctaagttagcgcgcttaggaacgagtttttggcagaaatccttg
gataaagcaaaggattcagcacgggattacgcggctgaattattgcgattacaagcagca
cgagagcatagtcgaggcaccatcttttcgaaagatactcattggcaaaacctctttgaa
gaaagttttccttttgaggaaacaccggaccaattgacttcgattgaagaagtgaaagca
gatatggaaaaacccaagccaatggatcgcttgctctgtggtgatgttggttttggtaag
acagaagttgcaatgagagccgcctttaaggctgttatggattcctatcaggtagcgatt
attgtcccgacaaccgttttggcccagcagcactttcattcattctcaaaacggatggct
gactatccgattaaaatagcgaccttaagtcgattcattagtaaaaaagagcagaagaaa
gtgctcatcgcaatggcgaatggtgaggtcgacatagttattggtacccaccgtttgtta
caaaaagatatcatatttaaaaagttaggcttgctggttattgatgaagagcagcgtttt
ggagtcgagagtaaggagtctttgaaacgcatgagagttaatgtagatattttatctatg
tcagccactcccattccccgtactctttatctatcaatgactgggctacgcgatttttcg
acaattctaacagcaccacacaatcgtaagccagtgagaacaatcgtcagtaaagagaat
gatgaattaattgaaatggccattagccgtgagcttgagcggggtggtcaagtttattat
cttcataatcgagtcggtaccattgataaagtcgctctcaagttaaaaagaatgtttcca
gaagcaggtattttagtgggccatgggcagatggatgaagaagaactcgagatggtaatg
aatgagtttactgatggtgacgcacagatactagtgtgcacaacaattattgaatctggt
atggatatacgcaatgcgaatacaatgataattgatcgtgcggaccgtttcggcctatct
tcattatatcaattacgtggccgtgtgggccgagagcatcgtcaagcttattgttattta
ctgatgccggcggacgaagcaattatggataatgccaaagagcgtcttagcgcacttcgc
aaacatacacacccaggcgcgggctttaaattagccatgcgtgatttagaaattcgtggt
gcaggcaatatgctgggttcgcaacaaagtggtcatattgcggctgtaggttttgagctt
tactgccagttattgaaaaaatcagtggccgacttgaagggtactgtgaagcaactgaca
acggcatcatttaatgccgactttattcataatggttttcaggctgtagagggagcgatt
tcggtggctttacctcctacttatatagaatctgatgatactcgactcgaaatgtataag
cgcttttccacaatgacgacttatcaagaagtaatgaatttagaaacggaactcaaagat
cgctttggagccttcactgaagaagttatagcgtatattagtagccaaaaaataaaattt
ctggctactgcacttgggttttattcagcagaaattaaaaaaggcttattctatttagaa
ggtgcggatggcctctttagaatgagtcgaaaaataccgcaaattaaaaagcaaggactc
gcggcattaaaagaagcagagcaatttttactaaatttagctaagcgacaaaaagttaag
cttctttag
DBGET
integrated database retrieval system
