Lentisphaera profundi: PQO03_07175
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Entry
PQO03_07175 CDS
T08820
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
lpro
Lentisphaera profundi
Brite
KEGG Orthology (KO) [BR:
lpro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lpro03016
]
PQO03_07175
Enzymes [BR:
lpro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PQO03_07175
Transfer RNA biogenesis [BR:
lpro03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PQO03_07175
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
S1
DUF7307
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
WDE95498
LinkDB
All DBs
Position
1:complement(1812065..1814068)
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AA seq
667 aa
AA seq
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MIEEFRGLSAYTDGTRLKLAYVLGIEKKRAQALIASGRTIPLPLKNVLFSFDTQISEDDF
RLKHRDHEEKIAKIAEQIDLEMLWEMLDGEECKTFSLTDLCDFYFSEKADYSMSALFDVL
CQDIVYFKQRLAEFTIRDSEQVQAILKSREKKRLQEEYEAELEPWVKKVLVSTDEEAIEV
PEKFTSFVGQLCNLIWSKQNSDASRFLDKLIGKTPVRIKALEFLKKTGSIGEGHDEHLLL
AGIRPDFSQKLLDLADELEVEEADRTILGPDFYCFSIDDESTSDVDDVLSVERLAEGKLK
VGIHIADVSSYVVKGSVLDQEAQNRATSIYLPTGTVNMFPQELSTNRASLLPGEAKPALS
YYATFDSDAEVIDKKIERSLIHVSEKLSYSFCDDVLDGEVEATEGLEQDLHSLHDLSIQL
MEKRKANGAVTFNRPENKITVKGDEVTVTEVRANSASRALIGEFMIFANNMGAQYCLDHD
VPVLYRVQEKSDKIVPMPDVYDPISFDAAIKCMKKSRMTLYAGAHAGLGLDCYTQFTSPI
RRYTDLVMQRQLIAAIEKREFIYQEEDLLELQAKGESRLGEVRDVQRQSESFWLYEYLRQ
FKLEEVYEATVVAHLNGGLLVELDGIAMRLKLNHGKKLDIGTRLEVKIQEVDPKLSHAKL
SLEKIFE
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgatagaagaatttcgcgggctaagtgcctacaccgatgggactcgattaaagttagcg
tatgtcttggggatagaaaaaaaacgtgctcaagcattgatagcaagtggccgaactatt
cccttgcctctaaagaatgtgttatttagttttgatactcagattagtgaagatgatttt
cgcttaaagcatagagatcatgaagagaagattgcgaagattgccgaacaaattgattta
gaaatgctgtgggagatgcttgatggcgaagagtgtaaaactttttcgttaacagactta
tgtgacttttatttttccgagaaagcagattattcaatgtcagccttatttgatgtttta
tgccaagatattgtttactttaaacagcggctcgctgagtttactataagagattcagag
caagtacaagcaatcctgaaaagcagagaaaagaaacgattacaagaagagtatgaagct
gagctcgagccttgggttaaaaaagtcttagttagcactgatgaagaagctattgaagta
cccgaaaagttcacgtcttttgtcggtcagttatgcaacttgatttggtccaagcagaat
tcagatgcctcgcgttttttggataagttgataggcaaaaccccggtgagaattaaagct
ttagagtttcttaagaaaacgggaagtattggagaaggtcatgacgagcatttattattg
gcggggattcgtcctgacttttctcaaaagctattagatttagcagatgaacttgaggta
gaagaggcagatagaactattttaggtcctgatttttattgttttagtatagatgacgaa
tccacaagtgatgtcgatgatgtacttagtgtagagcgtttagctgaaggtaagctaaaa
gtgggaattcacattgcggatgttagttcatatgtcgtcaaaggaagcgttcttgatcaa
gaagcacaaaatcgagctacgagtatttatttacctacgggtacagtgaatatgttcccc
caggaactctctactaatagagcttccttattgccaggagaagcaaaacctgcactctcg
tattatgctacttttgatagtgacgcagaagtcatcgataaaaaaattgagagaagcctc
atccatgtgagcgaaaaattgagttattcattttgtgatgacgtgttggatggcgaagta
gaagccacagaaggtttagagcaagatttgcatagtctgcatgatttatctattcagctt
atggaaaagcgcaaagcgaacggagcggtgacgtttaatcggcctgagaataaaatcaca
gtgaaaggtgacgaagttactgtaacggaagtgagagcgaattccgctagtcgtgccttg
attggtgaattcatgatttttgcaaataatatgggagcacaatattgtcttgatcatgat
gttcccgttttatatagggtccaagaaaagtcggataaaattgttcctatgccagatgtg
tatgatccgatatcttttgatgcagctattaagtgtatgaaaaaatcgagaatgacactc
tatgcaggagcgcatgcaggcttaggtttggattgttacacacaattcacttctcctatt
cgtcgttatacggatctcgtgatgcaaaggcagctgattgcagcaatcgagaaaagagaa
tttatttatcaagaagaagatttattggagcttcaggcaaagggtgagagtcgtcttgga
gaagtaagagatgtgcaaagacaatcagaaagcttttggttgtacgagtatttaaggcaa
ttcaaattagaggaagtctatgaagcaacagtagtggcgcatctaaatggcgggctcttg
gttgaattagatggaattgcgatgagacttaaattgaatcatggtaaaaagctagatatt
ggtacgcgcctagaggtgaaaattcaagaagtagaccctaaactaagtcatgcgaagtta
agtttagagaaaatttttgagtga
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