Lentisphaera profundi: PQO03_12820
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Entry
PQO03_12820 CDS
T08820
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lpro
Lentisphaera profundi
Pathway
lpro03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpro00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PQO03_12820 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpro03021
]
PQO03_12820 (rpoB)
03400 DNA repair and recombination proteins [BR:
lpro03400
]
PQO03_12820 (rpoB)
Enzymes [BR:
lpro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PQO03_12820 (rpoB)
Transcription machinery [BR:
lpro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PQO03_12820 (rpoB)
DNA repair and recombination proteins [BR:
lpro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PQO03_12820 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
WDE98720
UniProt:
A0ABY7VWV1
LinkDB
All DBs
Position
2:complement(318635..322426)
Genome browser
AA seq
1263 aa
AA seq
DB search
MAIRQNFGKIEEVIDTPDLISVQLESFREFLQESTNPDNREHRGLQETFKEIFPIKSFDE
NCILNFVKYEIGIPNVAMYDCLKDGESYQAGLHVTFALEIKDETGKSEVFEERVFMGDIP
VMTPRATFIINGAERVIISQLHRTPGICFEAGKSTSNKTLFSFRIIPDRGSWMEVQYDNH
DLIYIFMDRRRRRRKFLISTFLRAVYSDNNYDLLDCVYGVQNVSVASLAKDESTLAQKIL
VDDIADENGALIAKTLEPLSSSILDLVKDAGVKKLDIVDTTELGTTFITNLEKDPTTNRE
DALKYIYKKMRPGDPANIDNAQGLLNRLFFDQKSYDLGKVGRYKIQQRLRNAFDGAQFQS
KELPLPSDERTLTPSDMVAATITLMKIKNTHGRVDDIDHLGSRRVRTVGELVQNQFRSGL
SRTERLIRERMTLYDKNSTTIMPSKLINPKALQSVVRDFFGRSQLSQFMDQTNPLSELTA
KRRLSALGPGGLSRERAGFEVRDVHASHYGRICPIETPEGPNIGLISSLACYAKINPYGF
IETPYRKVIDGKVTEEIEYVTGDIEEDFVIAQANTKLNDDNTLAEDYVLSRTEGDSLEAE
KDRITHMDVSPKQLISPATGCIPFIEHDDANRALMGSNMQRQAVPLLIPDSPLVGTGMEA
LIAKGSRAVLTARADGIVASSVSDKIIITADGILKNEEDLKPENIYPLYKFMRSNSSTCM
NQKPIVRAGDVVKAGDVIADGFGTDNGELALGQNILVAFMPWCGYNFEDAIIISERMVQD
DVFTSIHIAEASIQARDTKLGPEEITRDTPNVGEEALRNLGPEGVIRLGSEVGPGDILVG
KITPKSETELAPEERLLRAIFGDKAADVKDSSLYVASSTNGIVMDIRVDRKIDPTKAAVT
KSDLKRKRKEIDAEYKVQYNEFLEDLAEKLGAILLGSKLSNDIVSKDGKETIIVPANRKI
TKVLLRKLSAQHDNYTMVDSPAKSQIDEVMDNFKPRLNDIRLRNTEKIDQLDDEDGQERG
VIKSVKVYIASKRKISVGDKMAGRHGNKGIVSNIVPKSDLPFMKDGTVIDIILNPLGVPS
RMNVGQILETHLGMAANRMGIKITTPVFDGCPESKINDMLEEVGYDRDGKARLYDGRTGD
SFDQRITVGMIYMLKLDHLVVNKIHARAVGPYSLVTQQPLGGKAQHGGQRFGEMEVWALE
AYGAAYTLQEMLTVKSDDVEGRTRIYESIVRGDNTLVAGLPESFNVLMKEMMSLCLDIRL
RKE
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atggcaattcgtcaaaactttggaaaaattgaagaagttatcgatactccagatttgatt
tctgttcagcttgaatcattcagagaatttttacaggaatccactaatccggataaccgc
gaacatagaggtctccaagagacgttcaaagaaatcttcccgattaagagcttcgatgaa
aactgtattttaaatttcgtcaaatatgaaatcggcatcccaaatgtcgccatgtatgac
tgcctcaaggatggcgaatcctaccaagctggtcttcacgttactttcgccctagaaatc
aaagacgaaacaggcaaatccgaagtttttgaagaacgcgtattcatgggtgatatccca
gtaatgactccgcgcgcaacattcatcatcaatggtgcagaacgcgtaatcatcagtcag
cttcacagaactcctggtatctgcttcgaagcaggtaaatccactagtaacaaaacactt
ttttctttcagaattattccagaccgtggttcatggatggaagtccaatatgacaaccat
gacctcatttatattttcatggatcgtcgtcgcagacgtcgtaaatttttaataagtact
tttttacgcgcagtttatagcgacaacaattacgacctactcgattgcgtctatggcgta
caaaacgtaagtgttgcttcactcgcaaaagacgaaagcactttagctcaaaaaattctt
gttgatgacatcgctgacgaaaacggtgcactaattgctaaaactttagagcctctttca
tcttcaattctcgacctcgtaaaagatgctggcgtgaaaaagcttgatattgttgatact
accgaactcggtacaactttcatcacaaacttagaaaaagatcctacgactaatcgcgaa
gatgctcttaagtacatctacaaaaaaatgcgtcctggtgatccagcaaatattgataac
gctcaaggcctattaaaccgcctcttctttgaccaaaaatcatacgatttaggtaaagtt
ggtcgttacaagattcaacagcgtttacgtaatgcttttgatggtgcacaattccaatca
aaagaattacctttaccaagcgatgaacgtactttaacaccttcagacatggtcgcagca
actatcactcttatgaaaatcaaaaatactcatggtagagttgatgatattgatcatttg
ggtagtcgtcgtgttcgtaccgttggtgaactcgttcaaaaccaattccgttcaggtcta
agtcgtacagagcgtttaattcgcgaacgtatgactctttatgataagaacagcactaca
atcatgccttcaaagcttatcaacccgaaagcattgcagagcgtagttcgtgacttcttc
ggtcgttcacagctttctcaattcatggatcaaacaaatcctctttccgaactcactgca
aaacgtcgtttatctgctttaggaccaggtggtctaagtcgtgaacgtgctggttttgaa
gtacgagatgttcacgcttctcactacggtagaatttgtcctattgaaactccagaggga
ccaaatattggtcttatctcttcacttgcgtgttacgcaaaaatcaatccatacggattc
atcgaaacaccttaccgcaaagttattgatggtaaagtgactgaagaaatcgaatacgta
actggtgatattgaagaagattttgttatcgctcaggccaacactaaactgaatgacgac
aatactcttgcagaagactatgttctctcacgtactgaaggcgattctctagaagctgaa
aaagatagaattactcacatggacgtcagtccaaaacagttgatctcccctgctacagga
tgtatcccctttattgagcacgatgatgcaaaccgtgcactcatgggatcaaacatgcag
cgccaagcagttccactcttaatacctgattcaccacttgttggtactggcatggaagca
ctcattgccaaaggctctagagctgtacttactgcaagagctgacggtattgttgcaagt
tctgtttctgataagattatcatcactgcagatggtatccttaaaaacgaagaagatctc
aaacctgaaaacatttaccctctctataagttcatgagatcaaactcatcaacttgtatg
aatcaaaaaccaattgttagagctggtgatgttgttaaagctggcgatgttattgctgat
ggttttggtactgataatggcgaactcgctttaggtcaaaatattcttgtggcattcatg
ccttggtgtggttacaactttgaggatgcgatcattatctctgagcgcatggttcaagat
gacgtctttacttcgattcatattgctgaagcaagtatccaagctcgtgacactaaactc
ggcccagaagaaattactcgtgacacacctaatgttggtgaagaagcacttcgtaatctc
ggtccagaaggtgtaatccgtttaggttctgaagttggtcctggtgatatcctcgtaggt
aaaatcactccgaaatctgaaactgaattagctccagaagaacgtcttctacgtgcaatt
ttcggtgacaaagctgcagatgtaaaagattcatctctttatgttgcatcaagcacaaat
ggtatcgtaatggatattcgcgttgatcgcaaaatcgatccaactaaagctgccgttact
aagagtgacctcaaacgcaagcgtaaagaaattgatgctgaatacaaagttcaatacaat
gaattccttgaagatttagctgaaaagctaggtgcgatcttactcggctctaaactatcc
aatgatatcgtatcaaaagatggcaaagaaaccattatcgttcctgctaatcgtaagatc
actaaagttcttcttagaaaactttctgctcagcacgacaactacacaatggttgattca
cctgcaaaatctcagattgacgaagttatggataacttcaaacctcgtctcaatgacatt
cgtctccgtaacacagaaaaaatcgatcaactcgatgacgaagatggtcaagagcgcggc
gtcatcaaatcagttaaggtttacatcgcttctaagcggaaaatctcagttggtgataaa
atggctggtcgtcacggtaacaaaggtattgtttctaatattgtcccaaaatctgacctc
cctttcatgaaagatggtacagttatcgacattattcttaacccactcggcgtaccttct
cgtatgaatgttggtcagatccttgaaactcacttgggtatggctgcaaatcgcatggga
atcaagattactacaccagtattcgatggttgcccagagtcaaaaattaatgacatgctt
gaagaagttggttatgatcgcgatggtaaggctcgtctctatgatggtcgcactggcgac
agctttgatcagcgtattacagttggtatgatttacatgcttaaactggatcaccttgtt
gttaataaaattcacgcacgtgccgttggaccttactcactcgttactcagcagcctctt
ggcggtaaagctcagcacggtggtcagcgtttcggtgagatggaagtatgggcactcgaa
gcttacggtgccgcgtatacacttcaggaaatgctcacagttaagtctgatgatgtggaa
ggtagaactcgtatatatgagtcaatcgttcgcggtgacaacactttagtagccggcttg
ccggaatcatttaatgtattaatgaaagagatgatgagtctctgtcttgatattcgtctt
agaaaggaatag
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integrated database retrieval system
