Lentisphaera profundi: PQO03_21445
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Entry
PQO03_21445 CDS
T08820
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
lpro
Lentisphaera profundi
Brite
KEGG Orthology (KO) [BR:
lpro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpro03032
]
PQO03_21445 (topA)
03400 DNA repair and recombination proteins [BR:
lpro03400
]
PQO03_21445 (topA)
Enzymes [BR:
lpro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PQO03_21445 (topA)
DNA replication proteins [BR:
lpro03032
]
Prokaryotic type
DNA Topoisomerases
PQO03_21445 (topA)
DNA repair and recombination proteins [BR:
lpro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PQO03_21445 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_Top1
Zn_ribbon_PaaD
Toprim_4
ARCH_RTEL1
Toprim_2
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
WDE98381
LinkDB
All DBs
Position
2:2518030..2520729
Genome browser
AA seq
899 aa
AA seq
DB search
MSKKNLVIVESPAKAKTIEKILGKDFEVKASFGHIRDLPQRKLGVDPENNFEPEYQVSAD
KKKVIAELKSAAKNCENIYLAPDPDREGEAIAWHLYEILKKQSKAEFKRVTFNEITKSAI
KTAFEKAHEVDMNRVDAQQARRILDRLVGYKVSPLLWKRNARSAGRVQTVALRLICEREK
AILAFTPEEYWSLQADIKNQTEDAKSFISKLDKIDGKKPIIGNAERSSEILSELEGSQFR
VKDIESKDRQKRPAPPFITSTLQQAASSNMRFSPSRTMSLAQKLYEGRDLGSEGTAGLIT
YMRTDSVAIAKEAQDAAIDFVNNIYGSEFSPDTPNFYKSKNKAQGGHEAIRPTDVTRTPK
KMAPYLNDDELKLYTLIWKRFVASQMVPALYRQDSITFLPENVGFSHEYLFKITGSVLIF
DGFMKVYNFSDDGSKEGDSKDVILPQLTKGEICDLLELIPKQHFTEPPPRFSEATLVKEL
EANGVGRPSTYASIIRTIQDREYVVKDKGRLNPSDKGMESCDFLVATLPALFEVSFTAHM
EELLDKVESGELVWTTMLADFYSGFSTWLQDAKTAGAPDKSIFAAVLDAIPEDISYQAPT
GKGKSAFSDEEFVGSIRESLTEDKPLSEKQWQTLLRVLLRYETVMPALKAKAEELGFEPE
LQEIITKTDEEQKINAESKSTELLALLEDVTFEEPQKPVKGRRTFNEANFYKSLKTQSES
GRNLTINQINALKKMVLKYQKQIDNFEAKAAELKLEIPEEAVIDPEESKEITALLKALST
ITEWNAPTKRGRMTYDDKSFYESLSSNFANKGSLTPRQLAALKKSVARYKEKIPAELYPE
GLEDAKGAAEEKTDVKCPKCDSPIVKKMGKRGPFYACSAFPKCKNLADSLEKFAENSED
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaaaaaatttagtaattgtagaatcgcccgcaaaagcgaaaacaattgaaaag
atcctaggaaaagattttgaagtcaaagcctcttttggtcatatccgcgacttacctcaa
cgtaagcttggtgtcgatcctgagaataattttgaacccgagtaccaagtaagtgctgat
aagaaaaaagtcattgcagagcttaaaagtgccgctaaaaattgcgagaacatataccta
gcacctgacccggaccgtgaaggagaagcgattgcttggcacctttatgaaatcttgaaa
aaacaaagtaaagccgaattcaaacgagtgactttcaatgagatcactaaatctgcgatc
aaaactgcctttgaaaaagctcacgaagtagatatgaatcgtgttgatgcacaacaagct
agacgtattttagaccgtcttgtgggctataaagtaagtcctttattatggaaaaggaat
gctcgtagtgctggccgtgtacaaaccgttgctttaagacttatttgcgaacgtgaaaaa
gctatactcgcctttactcctgaagaatactggagcttacaagccgatataaaaaaccag
actgaagatgctaagtcatttatctctaaactcgataaaattgatggtaaaaagcctatc
atcggcaatgctgagcgctcatccgaaatccttagtgaactcgaaggtagccaattcaga
gttaaagatatcgagtcaaaagatagacaaaaacgtcctgctccaccatttatcactagt
acgctgcaacaagctgcaagttcaaacatgcgctttagcccaagtcgtaccatgtcattg
gcacaaaagctctatgagggccgtgacttaggaagcgaaggaactgctggtttaattact
tacatgagaacggattcggttgccattgctaaagaggcccaggatgccgctatagatttt
gtcaataatatttatggaagtgagttttcacctgacacaccaaatttttataaatctaaa
aacaaagcacaaggtggtcacgaagccattcgtcctactgatgtcacacgcactcctaaa
aagatggcgccctaccttaatgatgacgagctcaaactttacacattaatctggaaacgt
tttgttgccagtcagatggtaccggctctttaccgccaagatagcatcaccttccttccc
gagaatgtcggtttcagccacgaatacctcttcaaaattactggttctgttttaatcttt
gatggttttatgaaagtttataacttctctgatgacggcagtaaagagggcgatagcaag
gatgtcatcttgccacaactcacaaaaggtgaaatttgtgacctcttagaactcatcccc
aagcagcatttcactgaaccgcctcccagattttctgaagcaactttagtgaaagaactt
gaagccaatggcgtaggacgtccttctacttatgcttcgatcattcgcaccattcaagat
cgtgaatatgttgttaaagacaaaggtcgccttaacccttcagacaaaggcatggaaagc
tgtgactttctcgtcgccactctccctgctttatttgaagtcagtttcactgcacatatg
gaagagctcttagataaagtcgaaagtggtgaattagtatggaccactatgctagccgac
ttttattctggctttagcacttggctacaagacgccaaaactgccggcgctccagacaaa
agtatctttgccgctgtactcgatgctatcccagaagacatcagctatcaagcacctacc
ggcaaaggcaaaagtgcttttagtgatgaagaatttgttggctcgattcgagaaagccta
actgaagataaacctttatctgaaaaacaatggcaaaccctgctccgtgttttactgcgc
tatgaaacagttatgcctgctttaaaagcaaaagcggaggaactcggctttgaacctgaa
cttcaagaaatcatcacaaaaactgatgaagaacaaaaaattaatgccgaaagtaagtcc
actgaactcttagcacttctagaagacgtcacatttgaagagcctcagaaacctgtcaaa
gggcgtcgaaccttcaatgaagccaatttctacaaatcacttaagacacaaagtgaatct
ggtcgtaacttaacgattaaccaaattaatgctttgaagaaaatggttctgaaatatcag
aagcaaattgataactttgaagctaaagcggctgaacttaagctagagatcccagaagaa
gctgttattgaccccgaagagagcaaggagattactgcccttttaaaggctctaagtacc
atcactgaatggaatgctccgacaaaacgcggacgtatgacctatgatgacaaaagcttt
tatgaatctctctccagtaactttgccaacaaaggttcactcactccccgtcagttagct
gccctaaaaaaatccgtggctcgctacaaggaaaagatccctgcggaactttaccctgaa
ggattagaagatgccaaaggtgcggccgaagaaaaaactgacgtcaagtgccctaaatgc
gattctcccattgtcaaaaaaatgggcaagcgcggtccattttatgcatgttcagctttt
ccgaaatgtaaaaatcttgccgattctctagagaaatttgctgaaaatagcgaagattaa
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