Lactiplantibacillus plantarum ST-III: LPST_C1188
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Entry
LPST_C1188 CDS
T01324
Symbol
polA
Name
(GenBank) DNA-directed DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
lps
Lactiplantibacillus plantarum ST-III
Pathway
lps03030
DNA replication
lps03410
Base excision repair
lps03420
Nucleotide excision repair
lps03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LPST_C1188 (polA)
03410 Base excision repair
LPST_C1188 (polA)
03420 Nucleotide excision repair
LPST_C1188 (polA)
03440 Homologous recombination
LPST_C1188 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lps03032
]
LPST_C1188 (polA)
03400 DNA repair and recombination proteins [BR:
lps03400
]
LPST_C1188 (polA)
Enzymes [BR:
lps01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LPST_C1188 (polA)
DNA replication proteins [BR:
lps03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LPST_C1188 (polA)
DNA repair and recombination proteins [BR:
lps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LPST_C1188 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LPST_C1188 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_polI_exo1
5_3_exonuc
HHH_5
HHH_2
Cupin_8
Motif
Other DBs
NCBI-ProteinID:
ADN98407
LinkDB
All DBs
Position
1313653..1316301
Genome browser
AA seq
882 aa
AA seq
DB search
MAKKLLLIDGNSVAFRAFFALHSQLERFVNPDGLHTNAIYGFNTMLDHMIKAVEPTDMLV
AFDAGKTTFRTAMYDNYKGGRAKTPSEFSEQMPYIKQLLDAYGIKHYELKDYEADDIIGT
LAGQADQTGYTTTVVTGDRDLTQLTTEHTTVAVTVKGVSEVERYTPAHVEEKLGITPAQI
IDMKGLTGDTSDNYPGVTKVGEKTALKLLKQYGTMEGIYENIDAMKQSKMKEHLIEDREQ
AAQAKVLATIKRDAPIDVQLADLSYDGPDLDQLAAFYQKMDFQSFLKKLHLQSDEPATPI
DYTVLTKANLTELQQFTDHVDFYLEMPTPNYHTSAFAGFAIGADDHWYISRDVELLMQPT
VADLLSSTTITKDVFDMKRTTVGLNRLGIQLGKVDFDLLLVSYLLDTNDNSNDLGSLAEQ
HGYTDLPSDETVYGKGVKRAIPEDDDVFFSHLARKLAAIASLKPQLLKELAANEQDQLYD
DIEKPMANVLAQMEIAGITVDSSRLKAMGSQFTERLSEIEQTIYQEAGEEFNINSPKQLG
HILFEEMKLPVIKKTKTGYSTAVDVLEKLAPEAPIVANILQYRQISKIQSTYVIGLLDAI
HSADQKVHTRYLQTLTQTGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHEGWQIFSSDYS
QIELRVLAHITDDENMQAAFKAGDDIHAATAMRIFHLNSAEEVTPNIRRQAKAVNFGIVY
GISDYGLSQNIGITRKQARSFIDAYFKEYPGVKKYMDEIVQTAKKQGYVETISHRRRYLP
DINSKSFNQRSFAERTAMNTPIQGSAADIIKIAMIKMQDKLQAAGLKATMLLQVHDELIF
EAPKEEIPVLEKLVPSVMDSAVQLAVPLKVESHYGDTWYDAK
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaaattattactgattgatggtaacagtgtggcatttcgggcgttctttgcg
ttgcatagtcaactggaacggttcgtaaatccagacggcctgcataccaacgccatttat
ggcttcaacacaatgcttgaccacatgatcaaggcagtcgaacccacggatatgttagtg
gcttttgatgcgggtaagaccacgtttcgaacagccatgtacgataattacaagggtggc
cgggctaagacgcccagtgagttttctgaacaaatgccgtatatcaaacagctattagac
gcatatggtatcaaacattatgaattaaaagactacgaagccgatgacattattggtaca
ctggccggtcaagcggatcaaaccggctacaccacgacggtcgtcactggtgaccgtgat
ttgacgcagttgacgaccgagcataccacggtggccgtgaccgttaaaggtgtttctgaa
gtggaacgctatacgccggcgcacgttgaagaaaagctgggcatcacaccggcacaaatt
attgatatgaaggggttgacaggtgatacctcggataactatccgggtgtcaccaaggtt
ggtgagaagaccgcccttaaattactcaaacagtatggtacgatggaaggcatttatgaa
aacatcgatgccatgaagcagagcaagatgaaggaacatctgattgaggatcgcgaacaa
gcggcgcaagctaaggtgctagcaacaatcaagcgggatgcgccgattgatgttcaattg
gctgatttatcctatgatggcccggatcttgaccagctggccgcgttttatcagaagatg
gactttcaatcatttttgaagaaattacacctacagtcggacgaaccagcaacgcccatt
gattataccgtcttgacgaaagctaacctgacggaattgcaacaatttaccgaccacgtg
gacttttacttggagatgccaacgccaaactaccacacgtcggcctttgctggctttgcc
atcggagcggatgatcactggtacatcagtcgggatgtggaattattaatgcaaccgact
gtggctgacctcttgagtagcacaacgattaccaaggacgtttttgatatgaaacgcacg
acggtcgggcttaatcgtttgggtattcagctaggtaaagtcgactttgatctcttactc
gtttcatacttattagatacaaatgataacagtaacgacttgggaagtttagctgagcaa
cacgggtacactgacttgccgagtgacgagaccgtttatggtaagggcgttaagcgtgcc
attcctgaagatgatgacgtcttctttagtcatctcgcccggaaattggccgcaatcgct
agtttgaagccacagttattaaaggaattggcagccaatgagcaggatcaactttacgat
gatatcgaaaaaccgatggctaatgtcttagctcagatggaaatcgccggcattacggtc
gacagcagtcgacttaaagccatgggcagtcagtttacagaacggttgagtgaaattgaa
cagacgatttatcaagaagccggtgaagagttcaatattaattcacctaagcaactaggt
cacatcttgtttgaagaaatgaaattacccgtaatcaagaagaccaagacagggtattct
accgccgtagacgttctagaaaagttagcaccggaagcaccaatcgtcgctaatatttta
caatatcggcagatctcgaagattcaatcgacctacgttatcggtttgttagatgccatt
cattctgctgatcaaaaagtgcatacgcgctacttgcaaacgttgacccaaactggccgg
ttatcgtccgttgatccaaacttacaaaacattccggtgcgcttggaagaaggacgtaag
attcgacaagcctttgttcctagtcatgaaggttggcagattttctcgtctgattattcg
caaatcgaattacgggttctcgcgcatattactgatgatgaaaatatgcaggccgctttt
aaagcgggtgatgatattcatgccgcaacggccatgcgaatctttcatttgaactcagct
gaagaggtgacgccaaatattcgacggcaagccaaggcggttaactttggaatcgtctat
ggaattagtgattacggcttgtcacaaaatatcggcattacgcgtaaacaggctcgcagc
tttattgacgcttacttcaaagaatatccgggtgtcaaaaagtatatggatgaaattgtc
caaacggcgaaaaaacaaggttatgtggaaaccatttcacatcgacgccggtacttgcca
gatattaattccaagagcttcaaccaacgctcattcgctgaacggacagccatgaatacc
cccatccaagggagtgcggctgatattatcaagattgcgatgattaagatgcaagataag
ttacaggctgcgggtttgaaagcaaccatgctgttacaagttcatgatgaattgattttt
gaagcgccaaaagaagaaattccagttttagaaaaattagtgccaagcgtgatggattcc
gccgtacagttagccgtaccgttaaaggttgagagccactacggtgatacttggtacgat
gcaaaatag
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