Lactiplantibacillus plantarum ST-III: LPST_C1787
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Entry
LPST_C1787 CDS
T01324
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
lps
Lactiplantibacillus plantarum ST-III
Pathway
lps03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LPST_C1787 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lps03400
]
LPST_C1787 (recD)
Enzymes [BR:
lps01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LPST_C1787 (recD)
DNA repair and recombination proteins [BR:
lps03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LPST_C1787 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
AAA_11
Viral_helicase1
AAA_22
HHH_5
AAA_16
UvrD-helicase
nSTAND3
AAA_28
HTH_IclR
T2SSE
Mg_chelatase
AAA_18
TsaE
AAA_23
AAA_29
AAA
Motif
Other DBs
NCBI-ProteinID:
ADN99003
LinkDB
All DBs
Position
complement(1921638..1924187)
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AA seq
849 aa
AA seq
DB search
MTDEQAHLFSDDIGREPVTHFIVGKVAAVFFSSADSFYKVLLVKVTEQNIDWSEDEIVVT
GNFADIQEETTYRFTGKTVTHPKYGVQFQADNYQNETPTTRAGLIAYLSGSDFPGLGKRT
AERIVDTLGEDAIDQILADPKVLKPIGLRASVQTTLIDTLTVNNGLEQTIIGLNAYGFGS
RLAAAIYARYQGDTLAKIQENPYCLVEDIKGVGFKKADQIAAQLKIDPQADDRLKAALLT
EINELCVENGDTYTTAQPLLNQTLQLLENARNVQIDPSKLADQLVVLAKENKIVGDENRI
YLRGLYEAEWRVAEHLQRLLAADNDEKLSERAVDHAIEHVGRASNITYDESQTEALKAAI
TAPVFLLTGGPGTGKTTIIRGLVALYAELHDVALDINQYKDKPFPILLAAPTGRAAKRMA
ETTGLPASTIHRLLGLTGREDGPEEPSKELDGGLLIIDEMSMVDTVLFQQLLTAIPSHMQ
VILVGDKDQLPSVGAGQVFHDLLKFSELPQIELTTIYRQGNDSSIIPLAHAIKDGYLPAD
FAVNQPDRSFIACNAYQVNHIVEQVVARAKAKGFSAEEVQILAPMYRGTAGIDQLNTTVQ
KIFNPLKSARQKHLTYNGQDFRVGDKVLHLVNSPEDNVFNGDIGKIVGIDLANDSHNESK
KDQITIAFDQNEVTYQRNEWNRLTLAYSMSIHKSQGSQFKMVILPLVPQFARMLQRNLLY
TAVTRAEQMLILLGDSQSFERSVTNESVNRQTTLTKRLQQVFCGDTVSDETATIATTDQA
EAMPAGEKATAVKKVASDEESATEKTQEPSSQSAGPTILTPALVSAGRIDPMIGMNGITP
ANFMPQVAN
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
gtgacggacgaacaagcacatttattttccgacgatattggtcgggaaccggtcacacac
tttatcgtcggtaaagtcgctgccgttttttttagcagtgccgatagtttttataaagtc
ttattagtcaaagtaactgaacagaacattgattggtcggaagatgagatcgttgttact
ggaaattttgcggatattcaggaggagacaacgtatcgttttaccggtaaaacggtcacg
catcccaaatacggggttcagtttcaagcggataattatcaaaatgaaacgcccacgaca
cgcgcaggcttgattgcctatctatctggtagtgattttcctgggttgggtaagcggact
gctgagcgaatcgtcgatactttgggcgaagatgccattgatcaaattttagctgatccg
aaggttttaaaaccaatcggacttcgggccagcgttcagacgactttgatcgacacgctc
acggtcaataacggtttggagcaaactatcattggacttaatgcgtacggttttgggagt
cggttagctgcggccatctatgcacgctatcaaggtgacactttggctaagattcaagag
aacccgtactgtttggttgaggatatcaaaggcgtcgggttcaaaaaagcggatcaaatt
gcggcccaacttaaaattgatccccaagcggatgaccggttaaaggcggccctattgact
gagattaatgagctgtgcgtggaaaacggtgatacgtataccacggctcaaccgttgctg
aatcaaacgttgcaactacttgagaatgctcgcaatgttcaaattgatccttcgaagctg
gctgatcagttggtcgtcttggcgaaggaaaataaaatcgtgggtgacgagaatcgtatc
tacttgcgcggcctctatgaagccgagtggcgcgttgcggaacatttacaacggttgtta
gccgccgataatgatgaaaaattgtctgaacgtgccgtggatcatgctatcgagcatgtc
ggtcgagctagcaacattacttatgatgaatcacaaaccgaagcactaaaagcggcgatt
acggcgcctgtttttctactaactgggggaccggggactggtaaaacgaccattatccgt
ggcttagtcgcgctctatgcggaattacacgacgttgcactagatatcaatcagtataag
gataagccttttccaattctgttggcggcaccgactggacgggcagccaagcggatggct
gaaacgactgggctcccagctagtactattcatcggttgcttgggttgacggggcgtgaa
gatggtcccgaggagcctagtaaggaattagatgggggcctcctgattattgacgaaatg
tcgatggttgacacggtactgtttcagcagttactgacggcgattccaagtcacatgcaa
gtcattcttgttggcgataaggatcaactgccatcggtaggagccgggcaagtgtttcat
gatttattgaagtttagtgaactgccccaaattgagttaacgacaatctaccggcagggc
aatgattccagtattattccgttggcccacgccatcaaagatggttatttaccggccgat
tttgccgtcaaccaaccggatcgctcatttattgcctgcaacgcttatcaagtcaatcac
attgttgaacaagttgtggcacgtgccaaggcgaagggcttcagtgctgaggaggtacaa
attctggccccgatgtatcgcggcactgccgggatcgatcagctgaataccacggttcag
aaaatctttaatccgttgaagagtgcccgtcagaagcatctaacgtataacggtcaagat
tttcgggtcggtgataaggtcctgcacctcgttaattcacccgaggataatgtttttaat
ggcgacattggtaaaatcgtcggtatcgatctggcaaatgattctcacaatgaatcgaag
aaagaccagatcacgattgcctttgatcaaaatgaagtgacttatcaacgcaatgaatgg
aatcgattgacattagcgtacagtatgtcgatccacaagtctcaagggagccagtttaaa
atggtgattctgccactggtaccacaatttgcacggatgctacaacgcaatctactgtat
actgccgtgacacgtgctgaacaaatgctgatcctgttaggtgatagtcaatcatttgag
cggagcgttaccaatgaatcggttaatcgccaaaccacactgacgaaacggttacaacaa
gtcttttgcggggataccgtatccgatgaaacggccactattgcgactactgaccaagca
gaggcaatgccagccggcgaaaaagcgacggcggttaagaaagttgcttctgacgaggag
tcggccactgaaaaaactcaggaaccgagttcccagtctgctggaccaacaattttgacc
ccagcgctagtcagcgctggccgaatcgatccgatgattggcatgaatggtatcacgcca
gctaatttcatgccgcaagtagctaattga
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