Leuconostoc pseudomesenteroides: FGL85_10385
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Entry
FGL85_10385 CDS
T06327
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lpse
Leuconostoc pseudomesenteroides
Brite
KEGG Orthology (KO) [BR:
lpse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lpse03009
]
FGL85_10385 (rlmD)
Enzymes [BR:
lpse01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FGL85_10385 (rlmD)
Ribosome biogenesis [BR:
lpse03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FGL85_10385 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_15
Cons_hypoth95
Methyltransf_25
RrnaAD
MTS
DOT1
TRM5-TYW2_MTfase
Methyltransf_11
PCMT
PrmA
N6_N4_Mtase
GP17
Methyltransf_4
DUF5764
Motif
Other DBs
NCBI-ProteinID:
QEA42886
UniProt:
A0A5B8T1M4
LinkDB
All DBs
Position
complement(2118822..2120219)
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AA seq
465 aa
AA seq
DB search
MAKANRVYPKKVPVSKNQEVEAEVIDITYQGMGVIKIDSFPIFVVDAIPGETIRVVVTKV
LKNYAFGRVIKRVTVSPDRVSDVDQVAITTGIAPLANLKYDAQLKFKQRQIEQLFKKVNV
PVTVAPTIGMTNPTAYRNKAQVPVQMIDGQLTTGFYRRGSHKLVPVDNFYIQDPKVDEAV
RVTRDILRDYNVSAYDEHTKKGVVRHIMARRGYYSHELMVVIVTNTKRLPEAEEIADKLR
AKLPELKSFIHNINNHDTNVIMGDWNETIWGADDIHDQLMGKDFVIGPNSFYQVNPQTTS
VLYTLAAKKAGLKATDTVVDAYSGIGTITLSVADQVKKVYGVEVIEGAVADAEKNAHNNH
IGNVEFVLADAPEQMVKWANEGLKPDVVFVDPPRKGLTSELIEAVSTMAPETFVYISCNP
ATLARDAVEILANGYVIDGDIQPLDQFPQTTHIESVTVFKRGVKS
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagctaatcgagtttatccaaaaaaagtaccagttagtaagaaccaagaagtt
gaagctgaagtaattgatattacttatcaaggcatgggcgtcatcaaaattgatagtttt
ccaatttttgttgttgacgcgattcctggagagaccatccgtgttgttgtgacgaaagtt
cttaagaattatgcatttggacgtgttatcaagcgtgtaactgtttcgccagatcgtgtg
tccgacgttgatcaagttgcaattacaacaggaattgcgccattagccaatttaaagtat
gatgcgcaacttaagtttaaacagcgtcaaattgaacaattattcaaaaaggttaacgta
ccagttactgttgcaccaactattgggatgaccaatcctacggcttatcgtaataaggcg
caggttccggtgcaaatgattgatggtcaactgacaaccggattttatcggcgaggctca
cataaactcgtaccagttgataatttttacattcaagatccaaaagtggatgaagcagtt
cgtgtaacacgagatattctgcgagactacaatgtatctgcttatgatgaacataccaaa
aaaggtgtcgtccggcacattatggctcgccgtggttattactcacacgaattgatggtc
gttattgttactaataccaaacgtttgcctgaagccgaagaaattgccgacaaattacga
gcaaagttaccagaactaaagagttttattcataatattaataaccatgatactaatgtg
attatgggtgattggaatgaaacaatctggggtgcggatgatattcacgatcagttaatg
ggcaaagattttgtgattggaccaaattctttctaccaggttaatccacagacaacatct
gtactctatactttagcggccaaaaaagccggattgaaagccacggatacagtcgttgat
gcatattctggtattggaaccattactttatcagttgctgatcaggtgaaaaaagtttat
ggtgttgaagtgattgaaggtgctgttgctgatgcagaaaagaatgcacataataatcat
attggtaatgtagagtttgtgttggctgatgcaccagaacaaatggtaaagtgggcaaat
gaaggcttaaaacctgatgttgtgtttgttgatccaccacgaaaagggctaacttctgaa
ttgattgaagcagttagtaccatggcacctgagacttttgtttacatcagttgtaatcca
gctactttagcacgtgatgctgtcgaaattttagcaaatggttacgtgattgatggcgac
attcaaccgctcgaccaatttccacagacaacgcatattgagagtgtcactgtctttaag
cgcggtgtaaaatcataa
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