Lactiplantibacillus plantarum ZJ316: zj316_0663
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Entry
zj316_0663 CDS
T02458
Symbol
rhe1
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lpt
Lactiplantibacillus plantarum ZJ316
Pathway
lpt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
zj316_0663 (rhe1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpt03019
]
zj316_0663 (rhe1)
03009 Ribosome biogenesis [BR:
lpt03009
]
zj316_0663 (rhe1)
Enzymes [BR:
lpt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
zj316_0663 (rhe1)
Messenger RNA biogenesis [BR:
lpt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
zj316_0663 (rhe1)
Ribosome biogenesis [BR:
lpt03009
]
Prokaryotic type
rRNA helicases
zj316_0663 (rhe1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AGE38202
LinkDB
All DBs
Position
690221..691807
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AA seq
528 aa
AA seq
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MKFTELGLSDSLLKAVNRAGYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPIL
QRLDFDNHNIQALVVSPTRELAIQTQEEIFRLGKDERAKVQVVYGGADIRRQIRNLKQNP
QVIVGTPGRLLDHIRRGTVKLDHVKMLVLDEADEMLNMGFLEDIESIIKQVPDERQTMLF
SATMPPEIKRIGVQFMKEPHHVKIKSKEMTADTVDQYYVKAKEFEKFDIMTRLFDVQAPE
LTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFKAGKLDILVATDVAA
RGLDVSGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSLTFVTPNEMEYLRVIEKLTKK
RMLPLKPPTESEAFAGQLAAAEANVDSLVAKTSTEKYADQAAELLQKYDATDLVAALLND
LTKDDSSAVPVKITPERPLPRHKGGGGNNRRGGYRGGNRNRNNSHGNGRGGYSHNGRNRD
RDRNGGRGDRKSNGYKGRSRDDNRSSNRNHDEGRKQSSKRSYTIRTND
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttacagaactaggcttatccgatagcctacttaaagcagttaatcgggccgga
tacgaagaagcgaccccgattcaagccgaaaccattccaatggttctagaaggcaaagat
gtgattggtcaagcacaaaccggtactgggaagaccgccgcgtttgcattaccaatctta
caacgcttggattttgacaaccataacattcaagcattagttgtttcaccaacgcgtgaa
ttagcaatccaaactcaggaagaaatcttccgcttaggtaaagacgaacgggcgaaagtc
caagtcgtttacggtggtgctgatattcggcgccaaatcagaaatctgaagcaaaaccca
caagtaatcgtcggaactcccggccggttgcttgaccacattcgccggggcacggtcaag
ttagaccacgtcaagatgttagttcttgatgaagctgacgaaatgttaaacatgggtttc
ttggaagatatcgaatcaattatcaaacaagtgccggatgaacgccaaactatgttgttc
tccgcaacgatgccacctgaaatcaaacgcattggtgtgcagttcatgaaggaaccgcat
cacgttaagatcaaatcaaaagaaatgactgctgatacggtcgatcaatattacgttaaa
gccaaagaatttgaaaagttcgatattatgacccggttgtttgatgttcaggcacctgaa
ctcacaatcgtgtttggtcgaacgaaacgtcgagttgacgaattatcaaagggtctcgaa
gcacgtggttataatgccgctgggattcatggtgatttgagccaacaacgtcggacgcaa
atcatgcgtcaattcaaggctggtaaattggatattttggttgcaaccgatgtggctgct
cggggacttgatgtttctggtgtgacccacgtttacaattacgatattccacaggatccg
gacagttatgttcaccggattggccgtactggccgtgccggacacaagggtgtttcatta
acttttgtaacaccaaacgaaatggaatatttgcgggtcatcgaaaagttgaccaagaag
cggatgttaccattgaagccaccaactgaatctgaagcttttgctggccaattagctgct
gcagaagcgaatgttgattcgttagttgctaagacttcgactgaaaagtatgctgatcaa
gctgctgaattattacaaaaatacgatgctactgatctagttgctgccttgttaaatgac
ttaaccaaggatgactcgtcagcggtacctgttaagattacgccagaacgcccattacct
cgtcacaaaggtggcggcggtaacaaccggcgtggcggatatcgtggcggtaatcgcaac
cgcaataacagtcatggcaatggtcgtggcggttattctcacaatggtcgcaatcgcgac
cgtgatcgtaacggtggccgtggcgatcggaagagcaatggttataaaggtcgcagtcgc
gatgataaccggagcagcaaccgcaaccatgatgaaggtcgcaagcaaagcagcaagcgg
agctatacgatccgcaccaatgattaa
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