Limnobaculum parvum: HYN51_01130
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Entry
HYN51_01130 CDS
T05491
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
lpv
Limnobaculum parvum
Brite
KEGG Orthology (KO) [BR:
lpv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpv03019
]
HYN51_01130
Enzymes [BR:
lpv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HYN51_01130
Messenger RNA biogenesis [BR:
lpv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HYN51_01130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
ResIII
NACHT
T2SSE
PhoH
AAA_23
NTPase_1
TsaE
SRP54
Motif
Other DBs
NCBI-ProteinID:
AWH87280
UniProt:
A0A2Y9TUR8
LinkDB
All DBs
Position
1736721..1740608
Genome browser
AA seq
1295 aa
AA seq
DB search
MKSPLAALSGQIRHLMLRDQKRLRRRLDGARKITDSEKLSLIAAEIKSGIQSGLQRIANR
KAACPAISYPENLPVSQKKDQLLAAIRDHQVVIIAGETGSGKTTQIPKLCLELGRGIKGI
IGHTQPRRLAARSVAGRIADELSVTLGSAVGYKVRFNDRISDTTLVKLMTDGILLAEIQQ
DRLLSQYDTIIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPQRFSRHFNHA
PVIEVSGRTYPVEVRYRPIVEDADDSERDQTQAILDAVDELMHEAPGDILVFMSGEREIR
DTADALNKQELAHTEVLPLYARLSNNDQNRVFQSHTGRRIVLATNVAETSLTVPGIKYVI
DPGTARISRYSARTKVQRLPIEPISQASANQRKGRCGRVSDGICIRLYSEQDFLSRPEFT
DPEILRTNLASVILQMTAIGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAIEHNEQGKGH
LTPIGRQLAQLPIDPRLARMVIEGQNNGCVREVMIITSALSIQDPRERPLEKQQASDEKH
RRFIDKDSDFLAFVNLWNYLGEQQEELSSSQFRKLCKGDFLNYLRVREWQDVYTQLRQVV
KELGFPVNSTPAEYREVHTALLSGLLSHIGQKDLDKHEFTGARNARFSIFPGSGLFKKPP
KWVMVAELVETTRLWGRIAARLEPEWIEPLAQHLIKHAYSDPHWEKAQGAVIASEKVTLF
GLPIVNERKIQYGAIDPVLSRELFIRHALVEGEWQTRHPFFKANLRLMSEVEDLENKSRR
RDILVDDETLFNFYDRRIGEEVVSSRHFDSWWKKIARQQPELLNFEKSMLIKEGASKINA
QDYPNSWYQGNLKLRVTYQFELGANADGVTLHIPLPILNQVQEEGFDWQIPGLRRDLVIA
LIKSLPKPIRRNFVPAPNYAEAFLQRAKPLEMSLLDALEKELRLMTGVTVSRESWQLDQI
PDHLKITFRVLGDKSKMLAEGKDLAQLKRQLKGEVQQTLSAVADDGIEQTGLHVWSFGSL
PKRFEQKRGGYSVKAYPALTDEKDSVGIQLFETEQEQQQVMWKGTRRLLLLNIPSPVKYL
HEKLPNKAKLGLYFNPFGKVLDLIDDCIACGVDKLVIEHGGPAWDEASFDSLKEFIRAEL
NESVVAIAKQVEQILTTAHNINKRLKGRVDMSVALALSDIKAQMGRLIYRGFVCESSWHR
LPDILRYLQAIDRRIDKLPVDPHRDRAQMLKVEHTQKTYQLLLNKLPPHKPLSDEVIEIR
WMIEELRVSYFAQQLGTPSPISDKRIQQAIDKVTV
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatccccactagccgcattatccggtcaaattcggcatttaatgttgcgcgatcag
aaacggttgcgtcgtcgtttagacggtgctcgtaaaatcaccgatagtgaaaaattatca
ttaattgcagcggaaattaagtctggcattcagagcggcttgcagcgtattgcgaataga
aaagccgcatgtccggcaataagttatccggaaaacctgccggttagccagaagaaagat
caactgctggcggccattcgtgaccaccaggtggtcattattgcgggagagaccggttcg
ggaaaaaccactcaaatacctaaactctgccttgaactgggtcggggaattaaaggtatt
atcggtcatacgcagccaagacgattggctgcccgttctgttgcggggcgtattgctgac
gaattgagtgtaacgctgggttctgccgtgggttataaggttcgttttaacgatcgaatt
agtgacacgacactcgttaagctgatgactgatggtattttattagcagaaatacagcag
gatcgcttactcagccaatatgacacaattatcatcgacgaggcccatgaacgtagtctg
aatatcgattttattctgggctatttacgccaactgttgccgaaacgtccggatcttaaa
gtgatcatcacttcggcgactatcgatcctcaacgcttttcccgtcattttaatcatgct
ccggtaattgaggtttctggtcgtacttatccggtagaagtccgttatcggccaatcgta
gaagatgcagacgatagcgaacgggatcagacccaagcgatactggatgccgttgatgaa
ctgatgcatgaagcaccgggggatatcctggtatttatgagcggtgagcgtgaaattcgc
gatacggcagatgcgcttaataaacaggagctggcgcatacggaagtcctaccgctgtat
gcccgtctgtctaataacgatcagaatagggtgtttcaatcccataccggccgccgtatt
gtactggccactaacgtggcagaaacctcgctgaccgtcccgggaattaaatatgttatt
gatccgggtaccgcccgtatcagtcgctatagcgctagaaccaaagtgcagcgcttgcca
atagaacccatttctcaggcctccgccaatcagcgtaaagggcgatgtggccgggtatcg
gatggtatctgtattcgcctgtattctgaacaggatttcctctcccgtccggagtttacc
gatccagaaattcttcgtaccaatctggcctccgttattttgcagatgacggccattggg
ctgggtgatatcgccgcattcccgtttgtagaagcaccagataaacgcaatattcaggat
ggcgtaaggctgttggaagaattgggggccattgagcacaacgagcagggcaaaggacat
ctgacgccgataggtcgccaactggcccaattgcctattgatccacgtttagctcgaatg
gtgattgaagggcagaataatggttgcgtacgcgaagtgatgattattacttctgcgtta
tcgattcaggacccacgtgagcgtccgctggagaaacagcaggcgtcagatgaaaagcat
cgtcgatttattgataaagactctgactttttggcttttgttaacctgtggaactatttg
ggtgaacagcaggaagaattatcgtcatcccagttccgtaagttatgtaaaggggatttc
ctcaactatctgcgggtacgggaatggcaggatgtttacactcaactgcggcaggtggtg
aaagagttaggctttccggttaatagcaccccggctgaatatcgtgaggtgcatactgcg
ctgctgtcaggtttgttatcccatatcggtcaaaaagatttggataagcatgagtttacc
ggtgcccgcaatgcccgattctctatttttcccggatctggtttattcaaaaaaccacct
aagtgggtgatggtagccgaactggtggaaaccacccgcctgtggggacgtattgctgct
cgactggaacccgaatggattgaaccgttggcccagcacttgattaaacatgcttatagt
gacccgcattgggagaaggctcaaggtgcggtcatcgccagcgaaaaggtcacactgttt
ggcttaccgattgtgaatgaacgcaaaattcagtatggagctattgatccggttcttagc
cgtgagttgtttattcgccatgctttggtcgaaggtgaatggcaaacgcgtcacccattc
tttaaagccaatttgcgtttgatgtctgaagttgaagatctggaaaataaatcgcgacgt
cgagatattttggtggatgatgagacgctgtttaatttctacgatcgccgcattggcgaa
gaggtggtctctagccgccattttgatagctggtggaaaaagatcgcccgccaacagccg
gaactgctgaatttcgaaaaatcgatgttgattaaagaaggcgccagcaaaattaatgcg
caggattatcctaatagctggtaccaaggaaatttaaagctgcgggttacctatcagttt
gaactcggggctaatgcggatggggtaacgcttcatattccattaccgatccttaatcag
gtgcaggaagagggctttgactggcaaattccgggactgcgtcgggatttggttattgcg
ctgattaagtcgttaccaaaaccaatacgccgtaattttgtgcctgcgccaaactatgct
gaagcttttctgcaaagagccaaaccgctggaaatgagtctgttagacgcactagaaaaa
gagcttcgtttaatgactggcgttacggtgtcacgtgaatcatggcagttagatcagatt
cccgatcatcttaaaatcactttccgggtgcttggtgataaaagcaaaatgttggcagaa
ggtaaagatctggcacagttaaagcgccagcttaaaggcgaagttcaacagactttatca
gcggttgccgatgacggtattgaacaaaccgggcttcacgtctggtcttttggttcattg
cctaaacgttttgagcaaaaacgtgggggttactcggttaaggcctatccggcgttaacc
gacgaaaaagatagcgtcgggattcagctatttgaaaccgaacaggaacaacagcaggtg
atgtggaaaggaacacgtcggttgttattgttgaatattccatcgccggttaagtattta
catgagaagttgccgaataaagccaaactgggcctttattttaatccatttggtaaagtg
ctggatttaattgatgactgtattgcctgtggcgtggataagctggtcattgaacacggc
ggcccggcttgggatgaagcttctttcgattcactgaaagagtttattcgtgctgaattg
aatgagagcgtagtggctattgccaaacaggtcgaacagattctgactaccgcacataac
attaataagcgtcttaaagggcgggttgatatgtcggtagcgttggcgctgtcagatatt
aaagctcagatggggcgtctgatttatcgtggatttgtttgtgaaagcagttggcatcga
ttgccggatatcttacgttatctacaggcgattgaccgtaggatagataaactgccggtt
gatcctcatcgtgacagagcccaaatgctaaaagttgagcatactcaaaagacttaccag
ctgttattgaataagcttccacctcataagccactcagtgatgaagtgatagaaatccgc
tggatgatagaagagttaagggtgagttattttgctcagcaattgggtacgccgtctcca
atctcggataaacgcattcagcaggccatcgataaagttacagtgtaa
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