KEGG   Limnobaculum parvum: HYN51_01905
Entry
HYN51_01905       CDS       T05491                                 
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
lpv  Limnobaculum parvum
Pathway
lpv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lpv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HYN51_01905
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lpv03019]
    HYN51_01905
   03009 Ribosome biogenesis [BR:lpv03009]
    HYN51_01905
Enzymes [BR:lpv01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     HYN51_01905
Messenger RNA biogenesis [BR:lpv03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     HYN51_01905
Ribosome biogenesis [BR:lpv03009]
 Prokaryotic type
  rRNA processing factors
   HYN51_01905
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 PNPase_C
Other DBs
NCBI-ProteinID: AWH87421
UniProt: A0A2Y9TV21
LinkDB
Position
1902927..1906196
AA seq 1089 aa
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEQSLEAAFVDY
GAERHGFLPFKEISREYFSSNSASQGRPNIKDALHVGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRQELKEALDSLEIPNGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNIKILDLA
KEHIAALGRPDFSSKIKPYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARSTRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPIRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTVRDNESLS
LSILRLIEEEALKDNTKEVDAIVPVQIASYLLNEKRESVNAIERRSGGKVRVVVVPNDRM
ETPHYEVIRKKPGEESNVLSYMLPQLHETVTESEEETVLERKMPEQPALTSFSMPTESAP
VEEVKAPVVATPVASQPAGPGLFSRFVSGLKSLLAPAETVAAPVEKASAEKSSGNQQDRR
NNRRNNNRKDRTNDRSDRSDRSDRNNDRQNRDNSQESRRNNRQAAVAPQENVQEAATATT
VVRDENRRETRAERQRRRNEDKRQQQQQAVQAVQAEQQVEAVIENDVSVEIEEEKPTQAP
AQRRQRRQMNQKVRVATQNDQADENIVPVAAVKTHVAPVEEIKLLPQPADISENFVAPAP
LADETDGDKNGYNNATDNNGMPRRSRRSPRHLRVSGQRRRRYRDEKYPTVSPMPLTFAMA
SPEMASGKVCINYAALVTEQVKVFESVEALEAANSQQTATASAVTAVVEAPIEPQVVTSA
PIIETLSSVEPVIAVAYVAERDEQPTPVTELVVTPSVETVWHVEAPSPMNIAPIEAPKPL
QSESAPAPEAISVGSSSAPAASPAFSAEPEAIVKEVIQAVVEAPAVEVINTEPAEKKAAS
VASSPAFKPVMPELDIVEAEETPLIPQAKFEEVPVVPVAKEMAAKTSAGGHAATNYASAP
AARPAPVDD
NT seq 3270 nt   +upstreamnt  +downstreamnt
atgaaaagaatgttgattaacgcaactcaacaggaagagttgcgtgtagccttagttgac
gggcaacgtctgtatgatttagatattgaaagtccagggcatgagcaaaaaaaggcaaat
atatataaaggtaagattacccgcgttgaacaaagccttgaagccgcatttgttgactac
ggtgcagaacgacacggtttcctcccttttaaagaaatttcccgcgagtatttctcatct
aattccgcttctcagggtcgtcctaacattaaggatgcactgcatgtcgggcaggaagtg
attgttcaggtcgataaagaagaacgtggaaataaaggcgcagcactgacaacgtttatc
agtctggccggtagttatttagttctgatgcccaataacccacgcgctggtggtatttct
cgccgcattgagggtgacgaccgtcaggaattgaaagaagcactggactcattagaaatc
cctaacggtatgggtttaattgtccgtactgccggcgtaggtaaatcagccgaagcgtta
cagtgggacctgtctttccgtttaaaacactgggaagcaattaaaaaagcggcagaaagc
cgccctgcgccattcctgatccatcaggagagtaatgttattgttcgtgctttccgtgac
tatttacgtccggatattggtgagattctgatcgacaacatcaagatcctcgatctggct
aaagaacatatcgccgcgttaggccgtccagacttcagcagcaaaatcaaaccttacacc
ggtgaaattccgctgtttagtcactatcaaattgaatcgcagattgaatctgcattccaa
cgcgaagtacgccttccatctggtggttcgatcgttattgataccactgaggcgttaacc
gctatcgatatcaactccgcccgttctactcgcggtggcgatattgaagaaactgcattt
aataccaatctagaagcagccgatgaaattgcccgtcaattacgtctacgcgacttaggt
ggtttaatcgttatcgactttattgatatgaccccgattcgccatcagcgcgaagtagag
aatcgcttacgcgacgccgtccgtcaggaccgtgcccgtattcagattggtcgtatctcg
cgttttggcctgctggaaatgtcccgtcagcgcctgagtccttcactgggtgaatccagc
caccatgtctgccctcgttgtaacggtacgggcaccgtgcgtgataatgaatccttatct
ctgtctattcttcgtctgattgaagaagaagcactgaaagacaataccaaagaagttgac
gctattgttcccgtgcaaattgcctcttatctgttaaacgaaaaacgtgaatcagttaat
gccattgaacgccgttctggtggcaaggttcgcgtggtggtggttccaaacgatcgaatg
gaaacgccacattatgaagtgattcgtaagaaacctggcgaagagagcaatgtactgagt
tacatgctgccacagttacatgaaaccgtaactgaatcagaagaagagaccgtactcgag
cgcaaaatgccagagcagccagccttaaccagcttctctatgccgacagaatctgctccg
gttgaagaggtaaaagcacctgttgtcgctacgcctgtcgccagccaacccgcaggcccg
ggtctgttctctcgttttgttagcggattaaaaagtctgttagctccggcagaaaccgtt
gcagctccggttgaaaaagcatcggctgaaaaatcatccggcaaccaacaagatcgccgc
aacaatcgccgtaacaacaatcgtaaagatcgcactaacgaccgtagcgaccgtagcgac
cgtagcgaccgtaataacgatcgtcaaaaccgtgataacagtcaagaatcacgtcgtaat
aaccgtcaagctgcggtagcaccacaagagaatgttcaggaagcggctaccgcaaccacc
gtagttcgtgatgagaatcgtcgtgaaactcgtgcagaacgtcaacgtcgtcgtaatgaa
gacaagcgtcaacaacagcaacaagctgtacaagctgtacaagcagagcagcaggttgaa
gccgttatagaaaatgatgtttctgtagagatagaggaagaaaaaccgactcaggcgcca
gcacagcgtcgtcaacgtcgtcaaatgaaccaaaaggttcgcgttgcgactcaaaacgat
caagcagatgaaaatattgtgccagtggctgcggtgaaaactcatgttgctccggtagaa
gaaattaaattactacctcagccagcagatatcagtgaaaacttcgtggctccagcgcca
ctggctgatgaaactgatggagataaaaacggttataacaacgcaaccgataataacggt
atgccgcgtcgttctcgccgttcccctcgtcacctgcgagtgagtggccaacgtcgtcgt
cgctatcgtgatgagaaatatccaacggtttctccgatgccattaacattcgcaatggct
tcaccagagatggcatcaggtaaagtttgtattaattatgcagcgctggtaacagaacag
gtgaaggtttttgagtcggttgaagcactggaagctgctaactctcagcaaactgctaca
gcatcagcggttactgcggtggttgaagcaccaatagaacctcaagtggttacatcagcg
ccaataattgaaacattatcgtctgttgagccggtgattgcagtcgcctacgttgctgaa
cgtgatgaacaacctactccggtcacagaactggttgtcactccatcagtagaaaccgta
tggcatgttgaagcgccatcaccgatgaatattgcgccaattgaagcaccaaaaccattg
caaagtgaatcagcaccggcacctgaagcgatttcagtgggtagttcatcggctccggct
gcttctcctgcattcagtgctgagcctgaagctatcgttaaagaagtgattcaagcggta
gttgaagcgccagcggttgaagttatcaatactgagccggctgaaaagaaagcggcgagc
gtagccagctcccctgcctttaaaccggttatgcctgaattagacatcgttgaagcagag
gaaacccctttgattccacaagctaaatttgaagaagtgcccgtagttccagtcgctaaa
gaaatggcggccaagacttcagcaggtggtcacgcggccactaactatgccagcgctcct
gccgcaagaccggctccagttgatgattaa

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