Limnobaculum parvum: HYN51_01965
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Entry
HYN51_01965 CDS
T05491
Name
(GenBank) hypothetical protein
KO
K03546
DNA repair protein SbcC/Rad50
Organism
lpv
Limnobaculum parvum
Brite
KEGG Orthology (KO) [BR:
lpv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpv03400
]
HYN51_01965
DNA repair and recombination proteins [BR:
lpv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HYN51_01965
Archaeal homologous recombinant proteins
HYN51_01965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
ABC_tran
nSTAND3
TsaE
cobW
Motif
Other DBs
NCBI-ProteinID:
AWH87432
UniProt:
A0A2Y9TUY4
LinkDB
All DBs
Position
1919198..1922878
Genome browser
AA seq
1226 aa
AA seq
DB search
MRILSLRLKNINSLKDEWKIDFTQEPFCDNGLFAITGATGAGKTTLLDAICLALYHKTPR
LIVTPTQNELMTHHTAESLAEVEFEVQGVGYRAFWSQRRAKDAPDGNLQSPKVELAYIHD
GKIITDKIRDKLELTAQITGLDFSRFTKSMMLSQGEFAAFLNADPNERAELLEELTGTEI
YGHISEQVFLSHKEAKNQLDTLHTLLGSVQLLSEEQTQVLNQQSQQLQLQEKLQTQQTER
LLADKQWLEKREEYQRQESQCQHQFNLAQQNWQQQQPQLEKLQRSEPAEKLRPLHSNLIR
LHQERQDNQQEITRITQAEIELKQQLSVALRTREQAEQQHESQLKQHELTRTLINAQVIP
LDLQIGNRTSQLTQLESTRTHLILQRQQQQTEHGANLQQQRQLLSRQQALNDYFQHHPHH
QYWGENLLLWQQQLSQLTRINNDLQNAQQLADLKQKEIDELNQQLNEVTLSQERHLKQLQ
QLQQSFDKNDGAFQQLRTQHDLNGLKQQQHNLAQTRDRQQSLTLLFHRYQQVTKQYQVRS
TQLNELSVVIKQLDEERLTKRQQYSDKKIHLADLEKRAEQELIILRFEQERALLHPGSPC
PLCGSTQHPLVGENTSLNTSDTQQRLTQLKIEFQQLHDAGIELKSKVALHGEQQNQLTKE
MNNLSLEQDDINQQWQQHGKGLDVTLSLTEKKQFDDYLESVRQQEQQLQQQINLLEQAEQ
QWLQEKDLLNKQQNATQEAQQRVTLLAQNLLNKTQQQQQSEQGRLSLQQDYQMQSEQLQT
ALAHYELMLPPPEQYDSWYSTRKSEWQQWQNHLNDQKVLEQQLITLNTPIAALAARIESL
NSQAAENQTQLTACQQELEQLKQQRHQLFGDRQTDATMLQLQQQQHTLELAVTDSRNTWQ
QLNDRLTALNGQLSTLLSQQQQLEQKTDSAEHQFTAALQQSAFHHQAEFLDALLSPELHL
QLSELKEMLSNALHQAQALFNEANKQRQRHVAQRPESLTEESNIPHLSLQLAQLTEESKA
NGIRQGEIRQQLENDRQNRTNQQSVVERIALHQQQVDDWAYLNNLIGSSDGAKFRKFAQG
LTLDHLVYLANQQLNRLHGRYLLQRKESGALELQVVDTWQADNLRDTRTLSGGESFLVSL
ALALALSDLVSHKTSIDSLFLDEGFGTLDAETLDIALDALDNLNASGKIIGVISHIDAMK
ERIPVQIRVRKVNGLGISKLDDRFKK
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgcgtattcttagcctgcggcttaaaaacattaactcgctgaaagacgagtggaaaatc
gatttcactcaagaacccttttgcgataatggtctgtttgccattactggcgcgaccggt
gccggtaaaaccaccctgttggatgctatttgcctagcgctttaccataaaacaccgcgc
ctaatcgtgacgccaacccagaatgaactgatgactcaccacaccgctgaatcgctggct
gaagttgagtttgaagttcagggggttggctatcgcgctttctggagccagcgccgggcg
aaagacgcgccggatggcaacctgcaatcccctaaagttgagctggcctatattcacgat
ggcaaaattattaccgataaaatacgcgataagctcgaacttacggcccagatcaccggt
ttagactttagccgtttcaccaaatccatgatgctatcgcagggcgagttcgccgcattc
cttaatgcagaccccaatgagcgtgcagaactactggaagagcttaccggtactgagatt
tatggtcatatttctgaacaagttttcctgtcccataaagaggcgaaaaaccagctggat
accctgcataccctattgggtagcgtacaattgctgtccgaagaacaaactcaagtgcta
aaccaacagtcacagcaactgcaattgcaggaaaaattgcagactcagcaaactgagcgc
ctgctggcggataagcaatggttggaaaaacgagaagaataccagcgccaagaatcacag
tgccagcaccagttcaatctggcccaacagaattggcaacagcaacaacctcaactggaa
aaattacagcgtagcgaaccggcagagaagctgcgtcctctacatagcaacctgatacgt
ttgcatcaggagcgtcaagataaccagcaggaaataacccgcatcactcaggccgaaatc
gaactcaagcagcagctatccgttgccttgagaacgcgtgaacaggcggaacaacagcac
gaatcacagctgaaacagcatgagttaacccgcaccctgattaacgctcaagtcataccg
ctggatttacagattggaaatagaaccagccaattaactcagttggaatcaacgcgaacc
catctcatcctgcaacggcaacaacagcaaaccgagcatggagccaacctccaacaacaa
cgccaactactcagccgtcagcaggccctgaatgactattttcaacatcatccacaccat
caatactggggagagaaccttctcctgtggcaacagcaattaagccagctaacccgcatt
aataacgatttacagaacgcacaacaattagcagatcttaagcaaaaagagattgatgaa
ctcaatcaacagttaaatgaagtgacattgtcacaagagcgtcatcttaagcaactacaa
caattacagcaaagctttgacaagaatgatggggccttccagcaactgcgaactcagcac
gatctgaatgggttaaaacaacagcagcataaccttgcccaaaccagagatcggcagcag
tcgctcaccctgctgtttcatcgctatcagcaggtcactaaacagtatcaggtacggtca
actcaactaaatgaactctcggtggtcattaaacagctcgatgaggagcgattaaccaaa
cgtcagcagtatagtgataaaaaaatacatctggctgacttagaaaaacgggctgaacaa
gagctgatcattctccgatttgaacaggaacgcgccctgttacaccccggttctccctgc
ccgttgtgtggttcgactcagcatccattagtgggtgagaatacctcattgaatacatcg
gatacccaacagcgcctgacccaattaaaaatcgaattccagcagttacacgatgccggt
attgagttaaaaagtaaggttgcactacacggcgagcaacaaaaccagctcactaaagag
atgaataacctgagccttgagcaagacgatatcaatcagcagtggcagcaacacggtaaa
gggctggatgtcacgctctcccttactgagaaaaaacagttcgatgattatctggaaagc
gtgcgccaacaagagcaacagttacaacaacagataaacctacttgagcaagccgagcag
caatggctacaagaaaaagatctactcaataaacagcagaatgcgactcaggaagcccaa
caacgggtgacactactggcacaaaacctgttaaacaaaactcagcaacagcaacagtct
gagcagggccgattgtcactacagcaagattatcaaatgcagtcagagcagttgcaaact
gccttggcccactatgaactgatgctaccaccaccagagcagtatgacagttggtatagc
acacgtaaaagtgaatggcagcagtggcaaaaccacctcaacgaccaaaaagtattggaa
cagcaattaatcaccctgaataccccgatagccgctctagcggctcgaatagagagtctg
aattcacaggcggcagaaaatcaaactcaacttaccgcttgccaacaggagttagagcag
ctcaagcagcagcgtcatcaactattcggcgatcggcaaacggatgcgacaatgttgcaa
cttcagcaacagcagcacactttagaactggcggtaaccgacagcagaaacacttggcaa
cagcttaacgatcgactaacggccctcaatggtcagctttccaccctgctatctcaacag
cagcagctagagcaaaaaaccgacagtgcggaacaccaatttaccgccgcgttacagcaa
agtgctttccaccatcaagctgagtttcttgacgccctgttatctccggaattgcacctc
cagctcagtgaacttaaagagatgctctccaacgcgctgcatcaggcacaagctctgttt
aatgaagccaataaacaacgacaacggcatgtggcccagcggccagaatcgctaaccgaa
gagagtaatattccgcacctcagcttacagctcgctcaattaactgaagagagtaaagct
aacggtattcgtcagggcgaaattcgccaacagttagaaaacgaccgacaaaaccgcacc
aatcagcagtcagtggtggagcgtattgcactgcatcaacagcaggttgatgattgggcc
tatctcaataatctgatcggctccagcgatggtgcaaagttccgtaaatttgctcagggc
ctcacgctggatcatttagtctacttggccaatcaacagctaaatcggctacatggccgt
tatctgctacagcgtaaagagagcggtgctcttgaactacaggttgtcgatacctggcag
gcagataacctgcgggatacccgaacactatccggtggggaaagttttctggtcagcttg
gcattggcgctggcgttatccgatttggtcagccataaaaccagcattgactctttgttt
cttgatgagggtttcggcactttagacgccgaaacgctggatatcgccctcgacgcactc
gataacctaaacgccagtggaaaaatcattggggttatcagccatatcgatgccatgaaa
gaacgaatcccggtgcaaattcgagtccgtaaagtgaatggattgggtatcagtaaattg
gatgatcggttcaagaaatag
DBGET
integrated database retrieval system