Limnobaculum parvum: HYN51_02380
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Entry
HYN51_02380 CDS
T05491
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lpv
Limnobaculum parvum
Brite
KEGG Orthology (KO) [BR:
lpv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lpv03016
]
HYN51_02380
Enzymes [BR:
lpv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HYN51_02380
Transfer RNA biogenesis [BR:
lpv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HYN51_02380
Prokaryotic type
tRNA splicing ligases
HYN51_02380
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
CTD2
Motif
Other DBs
NCBI-ProteinID:
AWH87510
UniProt:
A0A2Y9TVE1
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All DBs
Position
complement(2010690..2011913)
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AA seq
407 aa
AA seq
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MKPSIQVMNVENGRPVKMWTQGVPVEDEAKRQLENTAKMPFIFKHIAVMPDVHLGKGSTI
GSVIPTVGAIIPAAVGVDIGCGMIAVRTSLHASDLPDNLSAVRDAIERAVPHGRDVNRSK
RDKGAWNDVPEVVNRAWLQLDPDFKQIIDKYPKLKNTNNRVHLGTLGTGNHFIEVCLDEN
QAVWFMLHSGSRGIGNAIGSLFIELAKKDMQRHFINLPHQDLAYLVEGSEHYNDYVFAVD
WAQRYARLNRETMMNNVIAAVRSVITKPFTLEMQAVNCHHNYVQKEQHFGQEVLVTRKGA
VSAQAGELGIIPGSMGARSFIVRGKGNPDAFCSCSHGAGRTMSRTEAKRRFSIEDQIKAT
AGVECRKDSDVIDEIPMAYKDIDAVMTAQSELVEIVHTLKQVVCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccttcaattcaggtaatgaacgttgagaatggccgcccggtgaaaatgtggact
cagggggtgccggttgaagacgaggctaaacgccagttagagaacacggccaaaatgccg
tttatctttaaacatattgcggtgatgccggatgtgcatttaggtaaaggatcaaccatt
ggatccgttattcctactgtgggggcgattattccggccgcagtgggcgtggatattggt
tgtggcatgattgcggtaagaacctctctgcacgccagcgatttgccggataacttatct
gccgtgcgtgacgccatagaacgagcggttccacatggacgagacgttaatcgatccaaa
cgagataaaggtgcctggaatgatgtgcctgaagtagtaaaccgcgcatggttacagtta
gatcctgactttaagcagattattgataaatatccgaagttaaaaaataccaataaccgt
gttcatttaggaaccttgggaaccggtaaccactttattgaagtttgtctggatgagaac
caggcagtgtggtttatgttgcactccggttcacgaggtatcggtaatgctatcggaagc
ctgttcattgaactggctaaaaaggatatgcaacgacacttcattaacctaccacatcaa
gatttagcgtatctggttgaagggagcgaacattataacgattacgtttttgccgttgat
tgggcgcaacgttatgcccgattaaaccgtgaaaccatgatgaataatgtgattgccgca
gtacgtagtgttatcaccaagccctttactttagagatgcaagcggtgaactgtcaccat
aactatgtacagaaagagcagcattttggtcaagaggtcttggtaacgcgtaaaggtgca
gtgagcgctcaggcgggtgaattagggattattccaggctccatgggggcaagatccttt
attgtgcgaggaaaaggtaacccggacgcgttctgctcctgtagccacggagcgggtcga
accatgagccgtaccgaagccaaacgtcgtttctcgatagaagatcaaatcaaggcgacg
gctggcgttgaatgccgtaaagattcagacgttattgatgagataccaatggcctataaa
gatattgatgcagtgatgaccgcacagtcagaactggtagaaattgttcatactttaaag
caggtagtttgtgttaaagggtaa
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