Limnobaculum parvum: HYN51_02965
Help
Entry
HYN51_02965 CDS
T05491
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lpv
Limnobaculum parvum
Pathway
lpv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYN51_02965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpv03019
]
HYN51_02965
Enzymes [BR:
lpv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HYN51_02965
Messenger RNA biogenesis [BR:
lpv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HYN51_02965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AWH87617
UniProt:
A0A2Y9TV78
LinkDB
All DBs
Position
complement(2144602..2146008)
Genome browser
AA seq
468 aa
AA seq
DB search
MSFNSLGLSADILRAVEEQGYRDPTPIQQQAIPVVLSGRDLMACAQTGTGKTAGFTLPLL
QRLSASGEAVRGRRPVRALILTPTRELAAQVGENVRDYSRHLNIRSMVVFGGVSINPQMM
KLRSGVDVLVATPGRLLDLEHQNAVDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKGLASKLLHNPASVEVAKRNTPSELVDQKVHFVDKKRKRELLSQMI
GEGQWQQVLVFTRTKHGANHLAEQLNKDGITASAIHGNKSQGARTRALDEFKNGKIRVLV
ATDIAARGLDIDHLPHVVNYELPNVPEDYVHRIGRTGRAECTGEAVSLVCVDEHKLLRDI
ERLLKFEIARIALPGYEPDPTIKAEPIVNGRQGRGQGQGQGQGGRPNSGRARPAAGQSAG
RSDNSPWGNKTEGRGDNKPRSQKPRSDKPAQQKRASFAGARRSESAGS
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttaattcactcggcttaagtgccgatattttgcgcgcggttgaagaacagggt
tatcgcgatccgacgcctattcaacagcaggcgattcctgttgttttatctggccgtgat
ttaatggcctgcgcgcaaaccggtaccggtaaaaccgcgggttttaccctaccactatta
cagcgcttaagcgcaagcggcgaagctgttcgtggtcgtcgcccggtacgggcactgatt
ctgacgccaacccgtgagctggcagctcaggtgggcgaaaatgtgcgtgactacagtcgc
catttaaatattcgttcgatggtggtttttggtggtgttagtattaatccacagatgatg
aaactgcgtagtggcgtggatgtgctggtggcaacgccgggacgtttgttggatctggag
catcagaatgcggtcgatttatctaaagtcgaaattctggtactggacgaagctgaccgt
atgctggatatggggtttattcacgatattcgtcgtgtgttagctaaactgcctgccaag
cgtcaaaatctgctgttttccgccaccttctctgatgaaattaaagggttagcgtcgaaa
ttattgcacaaccctgcttctgtagaagtggcaaaacgtaatacgccatccgaactggtg
gaccagaaagttcactttgttgataaaaaacgtaaacgtgaattgttgtcacaaatgatt
ggtgaagggcagtggcaacaagtgctggtgtttacccgtactaaacacggtgctaaccat
ttggcggaacaactgaataaagatggcattaccgcttcagccattcacggtaataaaagc
caaggtgctcgcacccgtgcgttggacgagtttaaaaatggtaagatccgcgtgctggta
gccactgatattgctgcccgtggtctggatattgaccatttgcctcacgtagttaactat
gagttgccaaacgtaccggaagattatgttcaccgtattggccgtaccggccgtgcagaa
tgtactggagaagcggtgtctttagtttgtgttgatgaacataaactgctgcgcgatatc
gagcgcttgctgaagtttgaaattgcgcgtattgccttaccgggctatgagccagatcca
accattaaagctgagccgatcgttaatggtcgtcagggtagaggtcaggggcaaggacaa
gggcaaggtggacgtccgaattcaggacgcgctcgcccggcggctggccaatctgcgggc
cgcagtgataatagcccgtggggcaacaaaactgagggtaggggtgacaacaagcctcgc
agccaaaagcctcgctcggataagccagcgcagcaaaaacgcgcttcattcgcgggtgct
cgtcgttctgagtcagcgggtagctaa
DBGET
integrated database retrieval system
