Limnobaculum parvum: HYN51_07605
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Entry
HYN51_07605 CDS
T05491
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
lpv
Limnobaculum parvum
Brite
KEGG Orthology (KO) [BR:
lpv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpv03019
]
HYN51_07605
Messenger RNA biogenesis [BR:
lpv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HYN51_07605
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Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
Motif
Other DBs
NCBI-ProteinID:
AWH88428
UniProt:
A0A2Y9TXG0
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Position
complement(3232483..3234420)
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AA seq
645 aa
AA seq
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MKFTARLSIFISLLVFLTMILALMTSMLSVYFVGEEKMEKHWYALATTVDQALIYQSPSA
YDRWLPVVMHATSVRHLTIKDEKDKTIYTHISDNRPSFWEKFYTLSETDLALPQHPGYRM
QILYVNPILSTLFSLPILLAILAVTVFIGLIMFWWIHWLKQQFKGLLLLEERSQRILAGE
REGAEVSDEKEWPVNTSAAINRLLSELSNMNNERVRVDKLIRSFAAQDAQTGLNNRLFFD
NQLATQLEEPNAHGVVMMIRLPELELMAIEHGKDVIDDLLYMLVNMLSTFIMRHPAALLA
RYFDNDFSVMLPHRSLKEADAIAAQLVNAVDMLPVSSNIEKESLIHIGICLYHVGQTPEQ
IMDNAEQAARTAVLQGSNGWFIYDSQVTNTVRGSVRWRTLLEQMLDKGGPDIYYKPAMTV
KGELNHREILYRIHDGSDELQPAEFMPLVQQFGLTERFDRLVLSKTLHLLDRWPNDTIAV
SVTVDSLLKHSFQVWLRHNLLEKEKSYRKRIIFELAEADVCQYSEQLRPVIRLLHLLGCR
LGIVQAGLTVVSTIYIKTMPIEVIKLHPGLVRNIDRRPENQLFVDSLISACEGTNVVVMA
ASVRTHPEWKTLRSRGIGGGQGEFFASPVLIPPPKEKNSGKNRHY
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttaccgccagattatctatttttatttctttattagtttttcttactatgatt
ttggcactgatgaccagtatgttaagtgtctattttgtcggtgaggagaaaatggagaag
cattggtatgcgcttgccactacggtagatcaggcgttgatttaccaatccccaagtgct
tatgaccgttggcttcccgtagtgatgcatgcgaccagcgtacgccacctgacgattaaa
gacgaaaaagataaaaccatttatacccatatcagtgataatcgtcccagtttctgggaa
aagttttacacccttagcgagaccgatctggcgttacctcagcatcccggctatcgcatg
cagatcctctatgttaacccgattcttagcacactcttttcattacccattctgttagcc
attcttgcggtcactgtttttattgggttgatcatgttctggtggattcactggctcaag
cagcagtttaaaggcttgctgttactagaggagcgctctcaacgaattttagccggagag
agggaaggtgccgaagtttcggatgaaaaagagtggccggtgaataccagcgctgcgatt
aaccggttgctatctgagctgagtaatatgaataatgaacgcgtcagggtggataaactg
attcgatcgtttgccgctcaggatgcgcaaactggacttaataatcgcctattttttgat
aatcaattggcgacccagcttgaagagcctaatgcccacggggtggtcatgatgattcgt
ttgccagagttagaattgatggcgatcgagcatggtaaagatgtgattgacgatttgctg
tatatgttggtgaatatgctatcgacctttatcatgcgccatccggcagcattattggct
cgttatttcgacaatgatttcagcgtcatgttacctcatcgctcactaaaagaagccgat
gctatcgctgctcaactggttaatgcagtggatatgttgccagtatcatcaaacattgaa
aaagagtctctgattcatatcggtatttgtctttaccatgtaggacagacaccagaacaa
attatggataatgccgaacaggctgcccgcacggcggtattacaggggagcaacggttgg
tttatctatgacagtcaggtaaccaatactgtcagaggcagcgttcgctggagaacgctg
ttagaacagatgttggacaagggcgggccggatatatattacaagccggcgatgacggta
aaaggtgaattgaaccatcgggagatactatatcgtattcatgatggcagtgatgagctg
caacctgcggagtttatgccgttggtacagcaatttggcttaacagaacgttttgaccgt
ttagtattgagtaaaacactgcatttgctcgatcgttggccgaatgacacgatagccgta
tcggtgaccgtcgactccctgctaaaacactcttttcaggtgtggctgcggcataatctg
ttggaaaaagaaaaatcgtatcggaagcgaattatatttgaacttgcagaggcggatgtt
tgtcaatatagcgagcaattgcgtccggtgattcgattactgcatctgttagggtgccgt
ttgggaattgttcaggcgggattaacggtagtcagtactatttatattaagaccatgcct
attgaagtgatcaaacttcatcctggtctagtgcgtaatatcgatcgacgtccggaaaat
cagctatttgtcgatagtcttattagcgcctgtgaaggtactaatgtggtggtgatggct
gcgagtgtaagaactcatcccgaatggaaaaccttgcgttcccgtgggattggtggtggt
cagggtgagttttttgcctcaccggtgttgattccacctcccaaagagaaaaatagtggt
aaaaatcgtcattattaa
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