KEGG   Limnobaculum parvum: HYN51_07605
Entry
HYN51_07605       CDS       T05491                                 
Name
(GenBank) RNase E specificity factor CsrD
  KO
K18765  RNase E specificity factor CsrD
Organism
lpv  Limnobaculum parvum
Brite
KEGG Orthology (KO) [BR:lpv00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lpv03019]
    HYN51_07605
Messenger RNA biogenesis [BR:lpv03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Others
     HYN51_07605
SSDB
Motif
Pfam: EAL GGDEF GAPES4
Other DBs
NCBI-ProteinID: AWH88428
UniProt: A0A2Y9TXG0
LinkDB
Position
complement(3232483..3234420)
AA seq 645 aa
MKFTARLSIFISLLVFLTMILALMTSMLSVYFVGEEKMEKHWYALATTVDQALIYQSPSA
YDRWLPVVMHATSVRHLTIKDEKDKTIYTHISDNRPSFWEKFYTLSETDLALPQHPGYRM
QILYVNPILSTLFSLPILLAILAVTVFIGLIMFWWIHWLKQQFKGLLLLEERSQRILAGE
REGAEVSDEKEWPVNTSAAINRLLSELSNMNNERVRVDKLIRSFAAQDAQTGLNNRLFFD
NQLATQLEEPNAHGVVMMIRLPELELMAIEHGKDVIDDLLYMLVNMLSTFIMRHPAALLA
RYFDNDFSVMLPHRSLKEADAIAAQLVNAVDMLPVSSNIEKESLIHIGICLYHVGQTPEQ
IMDNAEQAARTAVLQGSNGWFIYDSQVTNTVRGSVRWRTLLEQMLDKGGPDIYYKPAMTV
KGELNHREILYRIHDGSDELQPAEFMPLVQQFGLTERFDRLVLSKTLHLLDRWPNDTIAV
SVTVDSLLKHSFQVWLRHNLLEKEKSYRKRIIFELAEADVCQYSEQLRPVIRLLHLLGCR
LGIVQAGLTVVSTIYIKTMPIEVIKLHPGLVRNIDRRPENQLFVDSLISACEGTNVVVMA
ASVRTHPEWKTLRSRGIGGGQGEFFASPVLIPPPKEKNSGKNRHY
NT seq 1938 nt   +upstreamnt  +downstreamnt
atgaaatttaccgccagattatctatttttatttctttattagtttttcttactatgatt
ttggcactgatgaccagtatgttaagtgtctattttgtcggtgaggagaaaatggagaag
cattggtatgcgcttgccactacggtagatcaggcgttgatttaccaatccccaagtgct
tatgaccgttggcttcccgtagtgatgcatgcgaccagcgtacgccacctgacgattaaa
gacgaaaaagataaaaccatttatacccatatcagtgataatcgtcccagtttctgggaa
aagttttacacccttagcgagaccgatctggcgttacctcagcatcccggctatcgcatg
cagatcctctatgttaacccgattcttagcacactcttttcattacccattctgttagcc
attcttgcggtcactgtttttattgggttgatcatgttctggtggattcactggctcaag
cagcagtttaaaggcttgctgttactagaggagcgctctcaacgaattttagccggagag
agggaaggtgccgaagtttcggatgaaaaagagtggccggtgaataccagcgctgcgatt
aaccggttgctatctgagctgagtaatatgaataatgaacgcgtcagggtggataaactg
attcgatcgtttgccgctcaggatgcgcaaactggacttaataatcgcctattttttgat
aatcaattggcgacccagcttgaagagcctaatgcccacggggtggtcatgatgattcgt
ttgccagagttagaattgatggcgatcgagcatggtaaagatgtgattgacgatttgctg
tatatgttggtgaatatgctatcgacctttatcatgcgccatccggcagcattattggct
cgttatttcgacaatgatttcagcgtcatgttacctcatcgctcactaaaagaagccgat
gctatcgctgctcaactggttaatgcagtggatatgttgccagtatcatcaaacattgaa
aaagagtctctgattcatatcggtatttgtctttaccatgtaggacagacaccagaacaa
attatggataatgccgaacaggctgcccgcacggcggtattacaggggagcaacggttgg
tttatctatgacagtcaggtaaccaatactgtcagaggcagcgttcgctggagaacgctg
ttagaacagatgttggacaagggcgggccggatatatattacaagccggcgatgacggta
aaaggtgaattgaaccatcgggagatactatatcgtattcatgatggcagtgatgagctg
caacctgcggagtttatgccgttggtacagcaatttggcttaacagaacgttttgaccgt
ttagtattgagtaaaacactgcatttgctcgatcgttggccgaatgacacgatagccgta
tcggtgaccgtcgactccctgctaaaacactcttttcaggtgtggctgcggcataatctg
ttggaaaaagaaaaatcgtatcggaagcgaattatatttgaacttgcagaggcggatgtt
tgtcaatatagcgagcaattgcgtccggtgattcgattactgcatctgttagggtgccgt
ttgggaattgttcaggcgggattaacggtagtcagtactatttatattaagaccatgcct
attgaagtgatcaaacttcatcctggtctagtgcgtaatatcgatcgacgtccggaaaat
cagctatttgtcgatagtcttattagcgcctgtgaaggtactaatgtggtggtgatggct
gcgagtgtaagaactcatcccgaatggaaaaccttgcgttcccgtgggattggtggtggt
cagggtgagttttttgcctcaccggtgttgattccacctcccaaagagaaaaatagtggt
aaaaatcgtcattattaa

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