Limnobaculum parvum: HYN51_08855
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Entry
HYN51_08855 CDS
T05491
Name
(GenBank) biofilm formation regulator HmsP
KO
K26149
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
lpv
Limnobaculum parvum
Brite
KEGG Orthology (KO) [BR:
lpv00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
HYN51_08855
Enzymes [BR:
lpv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
HYN51_08855
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES3
GGDEF_GdpP
Motif
Other DBs
NCBI-ProteinID:
AWH88658
UniProt:
A0A2Y9TY32
LinkDB
All DBs
Position
complement(3494519..3496558)
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AA seq
679 aa
AA seq
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MYGSVIRSFGDKNLQVKRSLTIKQMSLVTVVALATICIFIVIQMFDFIQQRKEVYHIQLD
NISYSVSQPLERALWDRNMKEIQRALDNLMELEFLTKANLIVNTELVSVHSQRGPNGKVP
HVVEQLLALPVVSLIPLYSPEYNAIDPQPMGYLVLEADSYKLYQYTLKRFSTLLVAYLLL
AFMLSIAISWCLNRLLVYPLRAIADDLRTLPIENIQSHQLTLPRYHQDDELGVLVRSYNR
NQQALVQAHHQLTRLSTRDPITDLPNYTLFQELLKQQLMNSSHEKQPFSLLFINLDSFKE
VYQALGQEQGNLGLIDAVQRMREVLGEHTLLARLHGEEFIVLSKSLESPLHAMQLAQRLI
KNMTSPLSINEYQYQPTVSIGITQYPNDSEEPDGLIAHAQAAMLLAQRRGKNQVLFFEPD
MTNDIQQRLIMENEVVRGMKENQFRLYLQPQVNMATGQPYGAEALIRWHYAEDDIRYPGD
FIPLAEETGLILELGLWVLEEACTTLAHWKQQAIPLTLSVNLSVLQLQQPDLIEQLSRLC
QRYDFCPNKLILELTETANIYDLKAVLPTLIKMRELGISIALDDFGTGYCNLNYLSHLPV
DELKIDKSFVDGLPDDDELVQIVNSIAQILSLKVVIEGVETQQQADWLLSHGMHFAQGYL
FSRALPYEMFKEKYLSSYY
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atatatggttcagttatcaggtcatttggagataaaaacttgcaggtaaagcgttcgctg
acaatcaagcagatgtcgctagtaacagtcgttgctctggcgacaatttgtatatttatc
gtaatacaaatgtttgattttattcagcagcgtaaagaggtttaccacatccagctcgac
aatattagctattctgtttcgcagcctctggaacgcgcgctatgggatagaaacatgaaa
gagatccagcgcgcgttggataatctgatggagctggagtttttaaccaaagccaattta
attgtgaatacagagttggtttctgttcacagccaacgcgggcccaatggtaaagtccct
catgtggtagaacagctattggcacttcccgtcgtttcactgattccactctactctcca
gaatacaatgctatcgatccccaacctatggggtatctggtactggaggcggattcctac
aaactttatcaatatacgctaaagcgattttcaaccttattggttgcctatttgctgctg
gcgtttatgctttcgattgctatcagttggtgcctgaatcgtttgttagtttatccactg
cgggctatcgcggatgacctccgtacgctgccgatagaaaacattcagtctcatcaactg
actttgccccgataccatcaggatgatgagctgggggtgctggtacgcagttataaccgt
aatcaacaagcactggtacaggctcatcaccagttgacccgcctgagtacgcgggatcct
attaccgatttgcccaattacacgctgtttcaggagcttttaaagcagcagttgatgaac
agtagccatgaaaagcagccgtttagcctgctatttattaatttagattcctttaaagag
gtctatcaggcgttggggcaagagcagggaaatcttggtctaatcgatgcggttcagcgc
atgagagaagtgctgggtgaacatactctgctggcgaggcttcatggggaagagtttatt
gtactcagcaagtcgttggaaagcccgttacacgccatgcaactggcgcagcgcctgatc
aaaaatatgacttcaccgcttagcattaatgagtatcagtatcagccgaccgttagcatt
ggtattacacagtaccccaatgatagtgaagaacctgatgggctgattgcccatgctcag
gcagcgatgctattagctcaacggcgggggaaaaatcaggttctgtttttcgaaccggat
atgaccaatgatattcagcaacggttgatcatggagaatgaagtcgttcgcggaatgaaa
gagaatcagttccgcctttatcttcaacctcaggtcaatatggctaccggccagccttat
ggggcagaagcattgatccgttggcattatgctgaagatgatatccgctatccgggggat
tttattccattggcagaagagaccggattaattcttgagttagggttatgggtgttggaa
gaggcttgtacgacactcgcccactggaaacaacaggctattccgttgacgctatccgtt
aacctatcggtattgcagttgcagcagcctgatttaattgaacagttgagtaggttgtgt
caacgctacgatttctgcccaaacaagctcattctggaactgacagaaacagccaatatt
tatgatttaaaggctgtactgccaacattaataaaaatgcgcgaactaggcatttctatt
gcattagatgattttggtacaggctactgtaatcttaattatcttagtcacttaccggtg
gatgaactgaaaattgataagagctttgtggatggattaccagacgatgacgaactggta
caaattgtgaattctattgcccaaattctttccctgaaggtggtgatcgaaggagtggaa
actcaacagcaggctgattggctactgtcgcacggtatgcattttgctcagggctatctt
ttttcccgagcgcttccctatgaaatgtttaaggaaaagtacctgtcttcctattattaa
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