Limnobaculum parvum: HYN51_09050
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Entry
HYN51_09050 CDS
T05491
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lpv
Limnobaculum parvum
Pathway
lpv03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lpv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HYN51_09050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpv03400
]
HYN51_09050
Enzymes [BR:
lpv01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
HYN51_09050
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HYN51_09050
DNA repair and recombination proteins [BR:
lpv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HYN51_09050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AWH88692
UniProt:
A0A2Y9TYK0
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All DBs
Position
complement(3540781..3541590)
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AA seq
269 aa
AA seq
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MPELPEIETSRRGIEPYMVGHHIVKAVVRQPKLRWPVSGQIIALENAPVISVQRRAKYLL
IELPDGWIIGHLGMSGSVRILPEFIEPGKHDHVDFILSTGQVLRYTDPRRFGAWLWEEDL
ETSHVLKHLGPEPLGDEFSGEYLFIRSRAKKTLIKPWLMDNKLVVGVGNIYASESLFEAK
ILPQRPAGSLTESEAQRLVLTIKKVLQRSIEQGGTTLKDFLQADGKPGYFAQELQVYGRS
GEPCKICGTLIESEKHGQRTTFFCRHCQS
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
gtgccagaattaccggaaatagaaaccagccgtcgtggaattgagccctatatggttggg
catcatattgtcaaagccgttgttcgccagcccaaactgcgctggcccgtttccggacaa
attatagcgttagaaaatgcgcctgttatcagtgttcaacgacgagccaaatacttactg
attgaactccctgacggctggattatcggacacttaggcatgtcgggtagcgtcagaatt
ctgccggaatttattgagccgggtaaacacgaccatgtggattttattttatctacgggg
caagtactgcgttataccgatccaaggcgctttggtgcctggctctgggaggaagatctg
gaaaccagtcatgtacttaagcatctggggccagagccgttgggtgatgagtttagtgga
gaatatctatttattcgctcgcgagccaaaaagacgttgatcaagccgtggctaatggat
aataagctggtggttggtgttggcaatatctacgccagtgaatcactgtttgaggcaaag
atattacctcaacgtccggcaggttcattaacggaatctgaggcgcaacggttggtttta
acaatcaagaaagttttgcagcgttctattgagcaagggggtacaaccctaaaggatttt
ctacaggctgatggtaaacccggctattttgcccaagaactgcaggtttatggccggagc
ggagaaccctgtaaaatttgcggtacgctgattgaaagtgaaaaacatgggcagcgaaca
acctttttctgtcgccactgccagagttaa
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