Limnobaculum parvum: HYN51_09580
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Entry
HYN51_09580 CDS
T05491
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lpv
Limnobaculum parvum
Pathway
lpv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYN51_09580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpv03019
]
HYN51_09580
03400 DNA repair and recombination proteins [BR:
lpv03400
]
HYN51_09580
Enzymes [BR:
lpv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HYN51_09580
Messenger RNA biogenesis [BR:
lpv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HYN51_09580
DNA repair and recombination proteins [BR:
lpv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HYN51_09580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
HEM4
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AWH88785
UniProt:
A0A2Y9TYN6
LinkDB
All DBs
Position
complement(3661443..3663272)
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AA seq
609 aa
AA seq
DB search
MSTAVVINTEPLAAQVLRDTFGYHQFRPGQQEIVLEAVSGRDCLVVMPTGGGKSLCYQLP
ALLLDGMTLVVSPLISLMKDQVDQLRANGVSAGCLNSSQTREQQYEVISACRNGQIKLLY
VAPERLMMDNFLEQLSGWNPTLLAVDEAHCISQWGHDFRPEYRALGSIRQHFPDLPFIAL
TATADETTRQDIIRLLDLRDPLINISSFDRPNIRYTLIEKFKPTDQLQRFVQDQRGKSGI
IYCNSRKKVEEAANRLKAKGLSVAAYHAGMDNESREQVQEAFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAVLFYDPADMAWLRRCLDEKPQGAL
QDIERHKLNAMNAFAEAQTCRRLVLLNYFGESKQQPCGNCDICLDPPKQYDGLVDAQKAL
SCVYRVGQRFGVGYIAEILRGANNTRIRELGHDKLPVYGIGKDQSHEHWISVLRQLIHLG
LLTQNIAQFSALQLTEAARPVLRGENSLQLAVPRLLNLKSRSSAATKSFAGNYDRQLFAK
LRKLRKSIADEENIPPYVVFNDATLLEMAEQQPTRESELLSVNGVGYRKLERFGHPFLTL
IRDHLVSPD
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaactgcggtcgttattaatacagaacctttagccgcacaggtattacgtgacacc
tttggctatcatcagtttcgtcccgggcagcaggagatagtcctcgaggcggtatctggt
cgtgactgtttggtggtaatgccaacgggcggtggtaaatcattatgttatcagttacca
gcgctgctgctggacggaatgacattggtggtgtctccactgatttctctgatgaaagac
caggtcgaccaactgcgtgccaatggtgtttctgccggttgccttaactccagccaaacc
cgtgaacaacagtatgaagtgatctctgcctgtcgcaacgggcaaattaagctgctgtac
gttgcgccagaacggctgatgatggataacttccttgagcagcttagtggttggaaccca
accctgctggcagttgatgaagcccactgtatttcccagtgggggcacgatttccgtcct
gaatatcgcgctcttggctccatacgacaacattttcctgacctgccattcatcgcactg
acggcaacggcagatgaaaccacgcgtcaggatattattcgtctgttagatttgcgcgat
cctctgattaatatcagcagttttgatcgtcccaatatccgctataccctgatagaaaaa
tttaaaccaaccgatcagctacagcgctttgttcaggatcagcgcggtaaaagcggcatt
atttactgtaatagtcgtaagaaagtggaagaagccgccaacaggctcaaagcgaaagga
ctcagcgttgcggcctatcatgcgggtatggacaatgagagtcgggagcaggtgcaggaa
gccttccagcgtgacgatctgcaaatcgtggtggcgacggtggcgtttggtatgggtatc
aataagcctaatgtgcgttttgtggtgcacttcgatattccccgcaatattgaatcttac
tatcaggaaactgggcgagcaggccgggatggcctacctgcggaagcggtactattttat
gacccggccgatatggcttggttgcgccgttgtttggatgaaaaacctcagggcgcgttg
caggatattgaacgccacaaattgaatgcaatgaatgcttttgcggaggcgcagacttgc
cgtcgtctggtgctgcttaactactttggcgaaagtaaacagcagccttgtggtaactgc
gatatttgtcttgatccgcctaaacaatatgacggtttagtggatgctcaaaaagccctc
tcttgtgtttatcgggtaggtcaacgctttggtgttggctatattgctgaaattctgcgc
ggtgcaaataacacccgaattcgtgaattagggcatgataagctgccagtatacggtatc
ggtaaagatcagagccacgaacactggattagcgtattacgtcaactgattcatctgggt
cttttgacgcaaaatattgcccaattttcagcgcttcaattgaccgaagctgcccgtccc
gttttgcggggggagaattcattacagttggctgtgccaaggctgcttaatctcaaatca
cgcagtagtgcggcaaccaagagttttgctggcaattatgatcgtcagctatttgctaaa
ttgcgtaagctgcgtaaatctattgctgatgaagagaatattcctccctatgtggtattt
aacgatgcaacattgttggagatggcggagcaacagccaacccgtgaaagtgagttgttg
tcagtaaacggtgtcggctaccgcaagttagagcgttttggacaccctttcctgacgcta
atccgcgatcatttagtcagtcctgattag
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