Limnobaculum parvum: HYN51_11405
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Entry
HYN51_11405 CDS
T05491
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lpv
Limnobaculum parvum
Pathway
lpv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HYN51_11405 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpv03021
]
HYN51_11405 (rpoC)
03400 DNA repair and recombination proteins [BR:
lpv03400
]
HYN51_11405 (rpoC)
Enzymes [BR:
lpv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HYN51_11405 (rpoC)
Transcription machinery [BR:
lpv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HYN51_11405 (rpoC)
DNA repair and recombination proteins [BR:
lpv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HYN51_11405 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AWH89108
UniProt:
A0A2Y9TZB2
LinkDB
All DBs
Position
372652..376869
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQSLLKGMDLEAECEQLREELNETNSETKRKKLTKRVKLLEAFIQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKVNAKGEGMVLGGPKEAERVYRAG
HAELHARVKVRITEYEKNAEGELVAKTGLVDTTVGRAILWMIVPKGLPYSIINQALGKKA
ISKMINTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPAKKAEIITEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTETVINRDGVEEKQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHDGIVMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVPRNTLLNEKWCDLLEEHSVDIIKVRSVVSCDTDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNTGNLKL
KNAKFVINAANKLVITSRNTELTLIDEFGRTKESYKVPYGAVMAKGDGVGVTGGETVANW
DPHTMPVITEVGGFIRFTDMVDGQTITRQTDELTGLSSIVVLEGAERTGSTKDLRPALKI
VDAKGNDVLVPGTDMPAQYFLPGKTIIQLEDGVEIGAGDTLARIPQESGGTRDITGGLPR
VADLFEARRPKEPAILAEISGVISFGKETKGKRRLVITPMDGSEPYEEMIPKWRQLNVFE
GELVERGDVVSDGPESPHDILRLRGVHEVTRYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVHPGNTDFLEGEQAEYARIKIANRTLEADGKLAATFARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQARARRRHVEEVVS
TQVSAEEATANLAELLNAGLGSDDE
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttacttaagtttctgaaagcacaaactaagaccgaagagtttgatgcaatc
aaaatagcgctggcttcgccagacatgatccgttcttggtctttcggcgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgtgcccgt
attttcggaccagtaaaagattacgaatgcttgtgcggtaagtacaagcgtctgaaacat
cgcggtgtcatttgtgaaaaatgcggcgtagaagtgactcagactaaagtgcgtcgtgag
cgtatgggccatattgaactggcttctcctactgcgcatatttggttcctgaaatcactg
ccgtcccgtatcggcttattgttagatatgccattacgtgacatcgaacgcgtactgtac
ttcgaatcttatgtggttgttgaaggcggtatgactaacttggagcgtcgtcagatcctg
actgaagagcagtatctggatgcgctggaagagtttggtgatgaattcgatgccaagatg
ggcgctgaagctatccagtctctgctgaaaggcatggatctggaagccgagtgtgaacaa
ctgcgcgaagagttaaatgaaaccaactctgaaaccaaacgtaaaaagctgaccaagcgc
gttaagctgctggaagcattcattcaatctggtaacaagccagagtggatgatcctgacc
gtattaccggttcttccgccagatttacgtccgctggttccgctggacggtggtcgtttt
gcgacttctgacctgaacgatttatatcgtcgtgtgattaaccgtaacaaccgtctgaag
cgcctgctggatttggctgcgccagatatcatcgtacgtaacgaaaaacgtatgctgcag
gaagcggttgatgcgctgttagataacggtcgtcgtggtcgtgctatcactggttctaac
aaacgtcctctgaaatctttggccgatatgatcaaaggtaagcagggtcgtttccgtcag
aacctgttaggtaagcgtgttgactactcgggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgcctaagaagatggcattagagctgttcaaaccgttc
atctacggcaagctggaactgcgtggtttagctaccaccattaaagcagccaagaagatg
gttgagcgtgaagaagccgtggtatgggatatcttggatgaagttatccgtgaacaccca
gtactgttaaaccgtgcaccaactctgcaccgtttaggtattcaggcgtttgaaccggtt
ctgatcgaaggtaaagcgattcagttgcacccattagtgtgtgcggcctataacgccgac
ttcgatggtgaccaaatggcggttcacgtaccgttgacgctggaagcccagttggaagcg
cgtgcgttaatgatgtctaccaacaacatcctgtcccctgcgaacggtgagccaatcatc
gtaccatctcaggacgttgttttgggtctgtactacatgacccgtgacaaagtgaatgcg
aaaggcgaaggcatggtccttggtgggcctaaagaagccgagcgcgtatatcgtgctggc
cacgctgagctgcatgctcgcgttaaagttcgtatcactgagtatgaaaaaaatgctgaa
ggcgaactggttgctaaaacgggtctggtagatactaccgttggtcgcgccatcctgtgg
atgatcgtaccaaaaggtttgccttactcaattatcaaccaagcgttaggtaagaaagcc
atttccaagatgattaacacctgttatcgcatcttgggtctgaaacctaccgttattttt
gctgaccagacgatgtataccggttttgcttatgcagcacgttccggtgcgtctgtaggt
atcgacgacatggttatccctgccaagaaagcagagatcatcactgaagctgaaaccgaa
gtggcagaaattcaggagcagttccagtctggtctggttaccgccggcgaacgttataac
aaagttatcgatatctgggctgcggctaacgaacgcgtagcgaaagcgatgatggaaaac
ttgtcgactgaaaccgtgattaaccgtgacggtgtagaagagaaacaagtttctttcaac
agcatctttatgatggcagactccggtgcacggggctcggcagcacagattcgtcagcta
gcgggtatgcgtggtctgatggctaagccagatggctcaatcatcgaaaccccgatcact
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctctactcacggtgctcgt
aaaggtctggcggataccgcactgaaaacagcaaactccggttatctgacacgtcgttta
gttgacgtggcgcaggatctggttgttatcgaagacgactgtggaactcacgatggtatc
gtgatgacgccagttatcgaaggtggcgacgttaaagagcctctgcgtgagcgcgtatta
ggtcgtgtaacggctgaagacgttctgaaaccaggcactgctgacattttggtgccgcgc
aatacgctgctgaatgaaaaatggtgtgacctgttagaagagcactctgttgatattatc
aaggtacgttctgttgttagctgtgataccgacttcggtgtttgtgctaactgttacgga
cgcgacctggcccgtggccatatcatcaacaaaggtgaagctatcggtgttatcgcggct
cagtcaatcggtgaaccgggtacacagttaaccatgcgtacgttccatatcggtggtgcg
gcatcgcgtgcggcggctgagtccagtattcaggtgaaaaacacgggtaacctgaagctg
aagaacgctaagtttgttatcaacgctgctaataaactggttatcacttcacgtaatact
gaactgaccttaatcgatgaatttggtcgtactaaagagagctataaagtgccttacggt
gcagttatggcgaaaggtgatggtgtgggtgttacgggtggcgaaactgtcgctaactgg
gatccacataccatgccagttattactgaagtaggcggttttattcgctttaccgacatg
gtcgatggccagacgattactcgtcaaactgacgaattaaccggcttgtcttctatcgtt
gttctggaaggtgctgagcgtaccggtagtactaaagacctgcgtcctgcgctgaagatc
gttgatgctaaaggtaatgacgttctggttcctggtactgatatgcctgctcaatacttc
ttaccgggtaaaacaattatccagttagaagatggcgtagaaatcggtgctggtgatacg
ttagcccgtattccacaagaatctggcggtactcgcgatattaccggtggtttgccacgt
gttgcagacctgtttgaagcgcgtcgtccgaaagagcctgcgattctggctgaaatcagt
ggcgtaatctccttcggtaaagagacgaaaggcaagcgtcgtttggtcatcactccaatg
gatggcagcgagccatacgaagagatgattcctaagtggcgtcagctgaacgtgtttgaa
ggcgaactggtagaacgcggtgacgttgtttctgatggtcctgaatctccacatgacatc
ctgcgtttgcgtggtgtgcatgaagtaactcgttacatcgttaacgaagttcaggaagtt
taccgcttacagggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaaggtactatcgttcatccgggtaacactgatttcttggaaggcgagcaagca
gaatacgcgcgtatcaagattgctaaccgcacccttgaagccgacggtaaactggctgca
acctttgcccgtgacctgttaggtatcaccaaagcatcgttggcaacagagtccttcatc
tctgcggcatcgttccaggaaacaacgcgcgtgctgacagaagctgccgttgctggtaaa
cgtgatgagttacgtggtctgaaagagaacgtgatcgtgggccgcctgattccggcgggt
actggttatgcttatcatcaggctcgtgcgcgccgtcgtcatgttgaagaggttgtatca
actcaggttagcgcagaagaagcaacggccaacttggctgagctactgaatgccggtctg
ggtagtgatgacgagtag
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integrated database retrieval system
