Limnobaculum parvum: HYN51_12280
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Entry
HYN51_12280 CDS
T05491
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lpv
Limnobaculum parvum
Pathway
lpv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYN51_12280 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpv03019
]
HYN51_12280 (pnp)
03016 Transfer RNA biogenesis [BR:
lpv03016
]
HYN51_12280 (pnp)
Enzymes [BR:
lpv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HYN51_12280 (pnp)
Messenger RNA biogenesis [BR:
lpv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HYN51_12280 (pnp)
Transfer RNA biogenesis [BR:
lpv03016
]
Prokaryotic type
tRNA degradation factors
HYN51_12280 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
OB_RRP5_4th
KH_2
S1_RRP5
aRib
KH_SLS1_2
S1_2
KH-I_KHDC4-BBP
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
AWH89255
UniProt:
A0A2Y9TZY5
LinkDB
All DBs
Position
576129..578249
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AA seq
706 aa
AA seq
DB search
MLNPIVRKFKYGQHTVTLETGMMARQATAAVMVNVDDTAVFVTVVGAKKAKEGQSFFPLT
VNYQERTYAAGRIPGGFFRREGRPSEGETLIARLIDRPIRPLFPEGFLNEVQVIATVVSV
NPQVSPDIVAMIGTSAALVLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA
GTQSAVLMVESEAALLSEEQMLGAVMFGHEQQQVVIDNINSLAAEAGKAKWVWQAPETNQ
ALYAQVEALASARLGDAYRITDKQERYAQIDVIKADVVAALLAQDAGLNQSEIGDMLSSI
EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVVATLGTAR
DAQNIDELTGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDQTE
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDDENFVVLSD
ILGDEDHLGDMDFKVAGSREGISALQMDIKIEGITREIMKAALNQAKGARLHILGVMEQA
ISAPRGDISEFAPRIHTIKINPEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTVKIAAV
DGDKAKHAIRRIEEITADVEVNRVYSGKVTRIVDFGAFVSIVGGKEGLVHISQIADKRVE
KVSDYLQMGQEVQVKVMEVDRQGRIRLSIKEATAPSQEAPAASEEQ
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
ttgctaaatccgattgttcgtaaatttaagtatggtcaacataccgtgacgttagaaacc
ggtatgatggctcgtcaggcaacggccgctgtaatggtaaacgttgatgacaccgcagta
ttcgttaccgttgtgggcgcaaagaaagcaaaagaaggtcaatcgttcttcccattaacc
gttaactatcaagagcgtacctacgctgctggtcgtatccctggtggttttttccgtcgt
gaaggccgtcctagcgaaggcgaaacactgattgctcgtctgattgaccgtccgattcgc
cctctgttcccagaaggtttcctgaatgaagttcaggttattgcgaccgtagtttctgta
aatccacaggttagcccggatatcgtggcaatgattggtacttctgcagcattagtgctg
tcaggtattccattcaatggccctattggtgctgcacgtgttggttttattaacgatcaa
tatgttttgaacccaaccactgacgagctgaaagagagccgtctggatctggtggttgca
ggtacccaaagtgcagtactgatggttgagtctgaagcggcattactgagcgaagagcaa
atgctgggcgcagtaatgtttggtcatgaacaacaacaggttgtgattgacaatattaat
tcgctggcggcagaagctggtaaagccaagtgggtatggcaagcacctgagactaatcag
gcgctgtatgctcaggttgaagcattagcctctgcccgtttaggtgatgcgtatcgtatt
actgataagcaagaacgttatgctcaaatcgacgtgattaaagctgacgtagttgctgcc
ctgttagcgcaagatgctggcttaaaccaaagcgaaattggcgatatgttgagcagcatc
gagaagaacgtagttcgtagtcgcgtattgcgcggtgagccgcgtatcgatggccgtgaa
aaagatatgattcgtggtctggatgtacgcactggcgtattaccacgcacccatggttca
gcactgtttactcgtggtgaaactcaggctctggttgtggcaacgctgggtacagcccgt
gatgctcaaaacattgatgagttaaccggtgagcgtaccgacagcttcctgttccattat
aacttccctccgtactctgtaggcgaaaccggtatggttggttcacctaagcgtcgtgag
attggtcacggtcgcctagcgaagcgcggcgtattagccgtgatgcctgaccagactgaa
ttcccatatactgttcgtgtggtatcagaaattactgaatctaacggttcatcttctatg
gcttctgtttgtggtgcttcattagcactgatggatgcaggtgtgccaattaaagctgcc
gttgcgggtatcgcaatgggtctggtgaaagatgatgaaaactttgttgttctgtcagat
atccttggtgacgaagatcacctaggtgacatggactttaaagtagccggtagccgcgaa
ggtatctctgcactgcagatggatatcaaaattgaaggtattacccgtgagatcatgaaa
gcggctctgaatcaggctaaaggtgcacgtctgcacattcttggcgtgatggaacaggct
atttctgctccacgtggtgatatttctgagtttgctccacgtattcacaccatcaagatt
aatcctgagaaaattaaggatgtcatcggtaaaggtggtgcggtaatccgtgctctgact
gaagaaactggtacgactatcgaaatcgaagatgacggtacagtgaagattgcagccgtt
gacggtgataaagctaaacatgctattcgccgcatcgaagagatcactgctgacgttgaa
gtcaatcgtgtttattccggtaaggttactcgtattgttgactttggtgctttcgtttct
atcgttggcggtaaagaaggtctggtgcatatttctcaaatcgcagataagcgtgtagag
aaagtatcagattacctgcaaatgggtcaggaagttcaggtgaaagtgatggaagttgat
cgtcaaggccgtattcgcttaagtattaaagaagcgaccgcgccgagtcaagaagctcct
gccgcatctgaagagcaataa
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