Limnobaculum parvum: HYN51_13660
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Entry
HYN51_13660 CDS
T05491
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lpv
Limnobaculum parvum
Pathway
lpv03030
DNA replication
lpv03430
Mismatch repair
lpv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lpv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HYN51_13660
03430 Mismatch repair
HYN51_13660
03440 Homologous recombination
HYN51_13660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lpv03032
]
HYN51_13660
03400 DNA repair and recombination proteins [BR:
lpv03400
]
HYN51_13660
Enzymes [BR:
lpv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HYN51_13660
DNA replication proteins [BR:
lpv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HYN51_13660
DNA repair and recombination proteins [BR:
lpv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HYN51_13660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AWH89504
UniProt:
A0A2Y9U1T6
LinkDB
All DBs
Position
890594..894076
Genome browser
AA seq
1160 aa
AA seq
DB search
MADPRFIHLRIHSDYSMIDGLAKVGPLVKKMASLGMPAMAITDFTNLCGLVKFYGSAHGA
GIKPIIGADFRVQSETLGDELTELTVLAANNEGYQNLTMLISKAYQRGYVQGGPVIDRDW
LIEYKQGLILLSGARFGDVGQSLLRGNQQLVAECLQFYHTHFPDSYYLELVRTGRDEEEA
YLHAAVKLATREGIPVVATNDVKFIGVSDFDAHEIRVAIHDGFTLDDPKRPKKYSAQQYL
RSEEEMCELFSDLPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDMTTEDFLVVCSKEGL
EKRLEFLYPDPALRAERRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNDVPVGP
GRGSGAGSLVAYALGITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDHVSE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPMDPGMTLEKAFAAEPQ
LPELYEADEEVKALIDMARQLEGVTRNAGKHAGGVVISPTKITDFAPLYCDPEGQFPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKAGQEPIDISAIPLADQKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKQPEEM
AKQRSVFKEGAERMGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECLRMGLKVLPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNQGGYFKELFDLCARSDTKRLNKRVLEKLIMAGAFDRLGPHRAALMH
SLIEALKAADQHAKAEALGQADMFGVLAEEPEHVEKAYANVTPWPEQEILDGERETLGLY
LTGHPITQYLKELERYTGGIRLKDMHPTERGKTIVAVGLVVAARVMTTKRGNRIGICTLD
DRSGRLEVMLFSEALEKYQHLLEKDRILIATGQVSFDDFSGGLKMMVRELMDISEAREKY
ARGLAISLMDRQIDDQLLNRLRESLEPHRSGTIPVHLYYQREDARARLKFGTTWRVTPTE
RLLIDLRALVGNAQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggctgatcctcgttttattcatcttcgtattcacagtgactattccatgattgatgga
ttagccaaagtgggtccattggtgaaaaaaatggcttctctgggcatgcctgcgatggcg
attactgattttactaacctgtgtgggttggtgaagttttatggttctgcacacggagct
ggtattaaaccgattatcggtgctgattttcgggttcaaagcgaaaccttaggagatgag
ctaaccgagctcacggtcttagcagccaacaatgaaggctatcagaacctgacgatgctg
atttccaaagcctatcagcgcggctatgttcagggtggcccggttatcgatcgtgattgg
ttgatagaatataagcagggcttgatcctgctttctggggcgcgttttggcgatgtcggg
cagtcgttattgcgtggcaaccagcaattggttgctgagtgcttacagttctatcatacc
cacttcccggacagctactatctggagttggtcagaaccgggagagatgaagaagaggct
tatcttcacgcagcagtaaagctggctacccgagaaggcattccggttgttgccactaac
gatgtcaaatttatcggcgtttctgattttgatgctcatgaaattcgggtagccattcat
gatggttttacgctggacgatccgaaacgaccaaaaaaatacagtgctcagcaatatcta
cgcagtgaagaggagatgtgtgaacttttctctgatctaccggaagcgttgataaatagc
gttgagattgctaaacgctgtaatgtgaccattcgtttgggtgagtattttctgcctcag
tttccaactggggatatgaccaccgaggattttctggttgtctgctccaaagaggggctg
gaaaaacgcctagagtttttgtatcccgatcctgctctcagagcagagcgacgccctgaa
tacgatgagcgcttggatattgagctacaggttattaaccaaatgggattccccggttac
ttcctgatcgtgatggagtttattcagtggtcaaaagataatgacgtgcccgttgggcct
ggtcgtggttctggtgcgggttctctggtggcctatgcgttgggtattaccgatctggac
ccactggagtttgacctgctgttcgaacgcttcctgaacccggagcgggtctctatgcct
gacttcgacgttgacttctgtatggaaaaacgtgatagggttattgatcacgtttctgaa
atgtatggtcgagatgcggtatctcaaattattaccttcggtaccatggcggcaaaagcg
gttattcgcgatgtaggcagggttctggggcatccttacggtttcgtcgatcgcatatca
aaactaatcccaatggacccaggcatgacgctggaaaaagcgtttgctgccgagcctcaa
ttacctgaattgtacgaagcggatgaagaggttaaagcgctaattgacatggcgcgccaa
ctggaaggggtaacccgtaacgccggtaaacatgccggtggtgtggttatttctccaact
aaaatcaccgattttgctccgttatattgcgacccagaagggcaatttccggttacccaa
tttgataaaaacgatgtggaatatgcgggtctggtgaagtttgacttcctcggtctgcgt
accctgaccatcattgattgggcgctgggcatgatcaatgcgcgtcgggccaaggcaggt
caggaacctatcgatatcagcgcgattccactggctgaccaaaaaagtttcgatatgctg
caacggtcggaaactacggcggtattccagcttgaatcccgcggtatgaaagacctgatt
aagcgcctgaaacccgactgtttcgaagatatgatcgctttggtggcgttgttccgacct
gggccgctgcaatcgggcatggtagataactttatcgaccgtaagcacgggcgcgaagcg
atttcttatcctgatattcagtggcaacacgaatcactgaaaccggtgcttgaaccaacc
tacggtattatcctgtatcaagaacaggttatgcagatagcgcaggttctggcgggttac
accttgggtggcgcggatatgttgcgtcgtgcaatgggtaagaaacagcctgaggagatg
gccaagcagcgctcggtatttaaagaaggcgcagagaggatgggcatcgacggcgaattg
tcgatgaaaatctttgacttggtagaaaaatttgccggttatggttttaataaatctcac
tcagcggcttatgcattagtttcttatcagacgttatggttgaaagctcactatcctgct
gaatttatggcagcggtaatgactgctgatatggataacaccgaaaaagtggtgggtctg
gtggacgaatgcctgcgtatgggcttaaaagtactaccacccgatatcaacagcggcctg
taccatttccacgttaatgatgacggcgaaattgtttacggtattggtgcaattaaaggc
gttggcgaaggtccaatagaagctataattgaagcacgtaatcagggcggctactttaaa
gagttgtttgacctgtgcgctcgctctgacactaagcgcttaaacaaacgtgtgttggaa
aaattgataatggcgggggcatttgaccggttaggtccacatcgtgcggcgttaatgcac
tctttaatcgaagcattgaaagcagcggaccagcatgccaaggcggaagcgctagggcag
gccgatatgtttggtgtgttagcagaagaacccgagcatgttgagaaagcctatgctaat
gtgacgccgtggccggaacaggaaatattagatggtgagcgcgaaacgctgggcctctat
cttaccgggcacccaatcacgcaatatctgaaagaattggaacgctataccggcggtatt
cgcctgaaagatatgcaccccacagagcgtggtaaaaccatcgttgctgttgggttagtg
gtcgcggccagagtgatgaccactaaacgtggtaacagaattggtatttgtacgttggat
gatcgttccggtcgccttgaagtcatgctattctctgaggcacttgaaaagtaccagcat
ttgctggaaaaagatcgaatcctgatagcgaccggacaggtcagctttgatgattttagc
ggcgggcttaaaatgatggtccgcgaattaatggacatcagtgaagcgcgagaaaaatat
gcgcgtgggcttgccatctcattgatggacaggcaaattgatgaccagcttttaaaccgt
cttcgtgaatcgctggaaccccatcgatcggggacgattccagtacatctgtattaccag
cgggaagatgcccgggcacggcttaaatttggtacaacatggcgggtaacgccaaccgaa
cgtttgctgatagatctgagagcgcttgtgggtaatgctcaggtagaattggaatttgac
taa
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