Lactobacillus paragasseri: LpgJCM5343_02030
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Entry
LpgJCM5343_02030 CDS
T05840
Symbol
comEB
Name
(GenBank) competence protein ComEB
KO
K01493
dCMP deaminase [EC:
3.5.4.12
]
Organism
lpw
Lactobacillus paragasseri
Pathway
lpw00240
Pyrimidine metabolism
lpw01100
Metabolic pathways
lpw01232
Nucleotide metabolism
Brite
KEGG Orthology (KO) [BR:
lpw00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
LpgJCM5343_02030 (comEB)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
lpw02044
]
LpgJCM5343_02030 (comEB)
Enzymes [BR:
lpw01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.4 In cyclic amidines
3.5.4.12 dCMP deaminase
LpgJCM5343_02030 (comEB)
Secretion system [BR:
lpw02044
]
Type II secretion system
Competence-related DNA transformation transporter (DNA-T) core components
LpgJCM5343_02030 (comEB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dCMP_cyt_deam_1
MafB19-deam
Bd3614-deam
SNAD4
E3_binding
XOO_2897-deam
NAD1
APOBEC2
Motif
Other DBs
NCBI-ProteinID:
BBD47850
LinkDB
All DBs
Position
239451..239939
Genome browser
AA seq
162 aa
AA seq
DB search
MTRDRIPWKQYFMMQALVIAQRSTCDRALVGSVLVKDDRMIATGYNGSVSGQPHCDDVGH
LMVDGHCVRTIHSEMNALIQCAKNGISTEGTEIYVTYFPCFNCSKCLVQAGIKKINYYYD
YHDNPLALKLLREKGVAIEQVTLDHKYVQSLADRLEKADNEK
NT seq
489 nt
NT seq
+upstream
nt +downstream
nt
atgacaagagacaggattccgtggaagcaatattttatgatgcaggctttagttattgca
caacgttctacctgtgatcgtgccttagttggaagtgtattagttaaagatgaccggatg
attgcgaccggatataatggtagtgtttcgggacagcctcattgtgatgatgttggtcat
ttgatggtggatggacactgcgtaagaacgattcactctgaaatgaatgccttaattcaa
tgtgcaaaaaatggtatttccactgaaggtactgaaatttacgttacttattttccttgc
tttaattgtagcaagtgcttagtgcaagctggcattaagaaaattaactattattatgat
tatcatgataatcctttagccttaaaactattgcgtgaaaaaggtgttgcaattgaacaa
gtaacacttgatcataaatacgttcaaagcttagcagacaggctagagaaggctgacaat
gaaaaataa
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