Lactobacillus paragasseri: LpgJCM5343_02620
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Entry
LpgJCM5343_02620 CDS
T05840
Symbol
deaD
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lpw
Lactobacillus paragasseri
Pathway
lpw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lpw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LpgJCM5343_02620 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpw03019
]
LpgJCM5343_02620 (deaD)
03009 Ribosome biogenesis [BR:
lpw03009
]
LpgJCM5343_02620 (deaD)
Enzymes [BR:
lpw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LpgJCM5343_02620 (deaD)
Messenger RNA biogenesis [BR:
lpw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LpgJCM5343_02620 (deaD)
Ribosome biogenesis [BR:
lpw03009
]
Prokaryotic type
rRNA helicases
LpgJCM5343_02620 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BBD47909
LinkDB
All DBs
Position
301109..302566
Genome browser
AA seq
485 aa
AA seq
DB search
MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL
QNLDKQHDSIQAIVIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALKQTP
AILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILNYASSKHQTLLF
SATMPKPILRIGEKFMHDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLIDVQNPD
LAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVAA
RGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTIEQLTHK
KMMPLKPPTDEEAFKGQLSAANKKVTELLDGDLSKYTAEASQLLDDYSAVDLVAALLKNL
SKDAESVKVKITPEKPLPFKSKHGNNNRHFKRNFKRGGDRNERYHRKPNARRGGRKHDFV
IKKKD
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattttctgaaatgaacttgaaacctgaaattttaaaagctattaaacgttcaggt
tttgaagaagctactccaattcaagaaaagactattcccttagttttagagggaaaagat
gtaattggtcaggcacaaactggtactggtaaaactgctgctttcggtttgccaatttta
cagaatttagataaacaacacgactcgattcaagccattgttattgagccaacgcgtgag
ctcgctattcaaacccaagaagaattattccgtttgggtagggatgaaaaggctcgtgtc
caagttgtttatggcggggcagatattcgtcgtcaaattcgtgctttaaagcaaacccca
gcaattttagtaggaacaccaggacgattattagatcacttgaaacgtggaacaatcgat
atttctaaggtgaaaacaattgttttagatgaagcagatgaaatgcttgatatgggattt
attcaagatattgaaagcatcttgaattatgcttcaagtaaacatcaaactttgcttttc
tcagcaaccatgcctaagccaattctacgaattggtgagaaatttatgcatgatcccgaa
attgtaaaaattaagggaaaagaattaactgccaatttaattgatcagtattttgtaaga
gcaaaagaaaacgaaaaatttgatattttatgtcgtttgattgatgtccaaaatcctgac
ttggctgttattttcggtagaaccaaaagacgtgtcgatgaattaacacgtggtttacaa
gctcgcggctataacgctgctggaattcatggtgatctttctcaagctaagcgcatgagc
gtgttaaagagattccgtaaaggtaagcttgatattttagtagcaactgacgtggctgcc
cgaggattagatatttctggtgtaagtcacgtttataactatgatattccacaagatcca
gattcttacgttcaccgtattggtagaactggacgtgctggtcaaaacggaatgtcagta
acttttgttacaccaaatgaaattggctacatgcgtactattgaacaattaacgcataaa
aagatgatgccgctaaaaccgccaacagatgaagaagcatttaagggacaattgagtgca
gcaaataagaaggtaacagaattattagatggtgatctttctaaatatactgcagaagca
tcacaactacttgatgactattctgctgtagatttagtagctgccttgttaaagaattta
tctaaagatgctgaaagcgtaaaggtaaaaattacacctgaaaagccattgccatttaag
tcaaagcatggtaacaataatcgccattttaaacgtaacttcaagcgtggtggcgatcgt
aatgaaagatatcatcgtaagccaaatgcccgtcgtggtggtagaaaacatgactttgta
attaagaaaaaagactag
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