Lactobacillus paragasseri: LpgJCM5343_02800
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Entry
LpgJCM5343_02800 CDS
T05840
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lpw
Lactobacillus paragasseri
Pathway
lpw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LpgJCM5343_02800 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpw03021
]
LpgJCM5343_02800 (rpoC)
03400 DNA repair and recombination proteins [BR:
lpw03400
]
LpgJCM5343_02800 (rpoC)
Enzymes [BR:
lpw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LpgJCM5343_02800 (rpoC)
Transcription machinery [BR:
lpw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LpgJCM5343_02800 (rpoC)
DNA repair and recombination proteins [BR:
lpw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LpgJCM5343_02800 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BBD47927
LinkDB
All DBs
Position
328104..331775
Genome browser
AA seq
1223 aa
AA seq
DB search
MIDVNKFESMQIGLASPNKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWSC
ACGKYKGIRYRGIVCDRCGVEVTSAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDI
SPRALEEVIYFAAYIVIDAGDTDLEDKQLLTEAEYREKKAKFGNRFEAKMGAEAVKELLE
QVDIDKEVHDLKEELKTATGQKRTRAIRRLDILDAFKNSGNKPSWMVMDCIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPRIIVQNEKRMLQEAVDALIDNGR
RGRPVVGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVSPKLKFYQCGVPRP
MALELFKPFVMHELVKRGLASNIKNAKRKIDREDDDIWDILEDVIKERPVLLNRAPTLHR
LGIQAFEPVLVPGKSIRLHPLACEAYNADFDGDQMAIHVPLSDEAVAESRLLMLAAHHIL
APKDGKPIVTPSQDIVLGNYWLTQAERGREGEGMIFDSPAEAAIAYANGDIHYHTRIGLA
ADSMPEKPWPKGYEHGIFVTTYGKLVFNQIFPKDFFYINDPTQENLTHPVDERYFLQPGE
DIHEKLDNMKLGKAFKKGFLSDSIAQIYKDYKVQRTSDFLDDLKELGYTVCTTSGLTIGV
EDIPTITDKDDIVAEARKKVDVVSKQYCRGLITDEERHDRVISIWNNCKDIVQNEIAQIH
APRNPITIMADSGARGNISNFTQLAGMRGLMAAPNGGMMEIPVTSNFREGLSVLEMFMST
HGARKGMTDTALKTANSGYLTRRLVDVAQDVIIREEDCGTDRGLTVHAITEGDEMIEPLF
DRLVGRYTSKSVYDPETHEVICPADVLMDEDMAHKIVDAGVTEVTIRSVFTCNTQHGVCK
KCYGMNLATGDDVEVGEAVGTVAAQSIGEPGTQLTMRNFHNGGVAGAADITQGLPRVQEL
FEARNPKGRATISEVTGEITSIEEDPAEHTRQITVKGQTDTRTYDVPYTASVAVAEGDHV
VRGDKLTLGSIDPKELIRVRDALTTEKYILSEIQKAYRMQGVEIADKHVEVMARQMLQKV
RILDPGETDILPGELMDIGEFKARNREVIISGGIPATAQSVILGITKAALETNSFLSAAS
FQETTRVLTDASIRGKNDPLLGLKENVIIGKIIPAGTGMPVYREMEPKVDIPEDEKKKSV
YSIADIEKKLAAADAEKNDGSAD
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgacgtaaataagtttgaaagtatgcaaattggtttggcttctccaaacaagatc
agaagttggtcttatggcgaagttaaaaagccagaaactatcaactatcgtactttgaaa
ccagaaaaagatggtttgttcgatgaaagaattttcggaccaactaaggactggtcttgt
gcttgtggtaagtacaagggtattcgttatcgcggtattgtttgtgaccgatgtggtgta
gaagttacttctgctaaagttagaagagaacgtatgggtcacattgaattagctgcacca
gtttcacatatctggtatttcaagggtattccatctcgtatgggattagtgttagatatt
tcacctcgtgcacttgaagaagtaatatattttgctgcttacattgtaattgacgcaggt
gatactgatcttgaagataagcaacttcttacagaagctgaatatcgtgaaaagaaagca
aaattcggtaaccgttttgaagctaagatgggtgctgaagctgtaaaggaacttcttgag
caagtagatattgataaagaagttcatgacttaaaagaagaattaaagactgctactggt
caaaagagaactcgtgctatcagaagattagatatcttagatgcatttaagaattcaggc
aacaagccttcatggatggttatggattgtattccagttattccacctgatttaagacca
atggttcaacttgatggtggtcgttttgcaacttctgacttgaatgatttatatagacgt
gtaattaaccgtaacaatcgtttgaagagattattagacttaaatgcacctagaattatt
gttcaaaatgaaaaacgtatgcttcaagaagctgttgatgcattaattgataatggtaga
cgtggtcgtccggttgtaggaccaggtaaccgtccacttaagtctctttctcacatgtta
aagggtaagcaaggacgtttccgtcaaaacttgcttggtaagcgtgttgactactcaggt
cgttcagttatcgatgtttcaccaaagttgaagttttatcaatgtggtgttccacgacca
atggctttagagttatttaagccatttgtgatgcatgaattagtaaaacgtggtttagca
tctaacattaagaacgctaagcgtaagattgatcgtgaagatgacgatatctgggatatc
ttagaagatgtaattaaggaaagaccagttcttttgaaccgtgcacctactcttcaccgt
ctaggtattcaagcatttgaaccagttttggtgccaggtaagtcaattcgtcttcaccca
cttgcttgtgaagcttacaatgccgactttgatggtgaccagatggccattcacgttcca
ttatctgatgaagctgtagcagaatcacgtttgcttatgcttgctgctcaccatatcttg
gctcctaaggatggtaagccaatcgttactccttctcaggatattgttttaggtaactac
tggctaactcaagcagaacgtggtcgtgaaggcgaaggtatgatttttgattcaccagct
gaagcagctattgcatatgcaaatggtgatattcactaccacactcgtattggtttagcg
gctgattcaatgcctgaaaagccatggccgaagggatatgaacacggaatttttgtaact
acttatggtaagttagtcttcaaccaaatttttcctaaggatttcttctacattaatgat
cctactcaagaaaatcttactcatcctgtggatgaaagatacttcttacaaccaggtgaa
gatatccatgaaaagcttgacaatatgaagcttggaaaggcatttaagaaaggattctta
tcagattccattgctcaaatttacaaggattataaagttcaaagaacttctgatttcttg
gatgacttgaaggaattaggttacaccgtatgtactacttctggtttgactattggtgtc
gaagatattcctacaattactgataaggatgatatcgtagcagaagctcgtaagaaagtt
gatgtagtttctaagcagtattgtcgtggtttgattactgatgaagaaagacatgatcga
gtaattagtatttggaataattgtaaagatattgttcaaaacgaaattgctcaaattcat
gccccaagaaacccaattacaatcatggcggattctggtgctcgtggtaacatttctaac
tttactcaacttgctggtatgcgtggattgatggccgctcctaacggaggaatgatggaa
attcctgttacctcaaacttccgtgaaggattatctgttttggaaatgttcatgtctact
cacggtgctcgtaaaggtatgacggatactgctttgaagactgccaactcaggttactta
acccgtcgtttggtagacgtagctcaagacgttatcattcgtgaagaagattgtggcact
gatcgtggcttgactgttcatgcaattactgaaggcgatgaaatgattgaaccattattt
gatcgtctagtaggtcgctacacttctaagagcgtttatgatccagaaactcatgaagtt
atctgtccagcagatgtcttaatggatgaagatatggctcataagattgttgatgctggc
gttactgaagtaactattcgttccgtatttacttgcaacactcaacatggtgtatgtaag
aaatgttatggtatgaaccttgctactggtgacgatgttgaagttggtgaagcagtaggt
actgttgctgctcaatctatcggtgaacctggtactcagttgactatgcgtaacttccac
aacggtggtgttgccggtgctgcagatattactcaaggtttacctcgtgttcaagaattg
tttgaagctcgtaatcctaaaggacgtgctacaatttctgaagtaactggtgaaataact
tccattgaagaagatccagcagaacacactcgtcaaattacagtaaagggtcaaacagat
actcgtacttatgatgtaccatatactgcatctgtagcagttgctgaaggtgaccatgtt
gtacgtggagataaattgactcttggttctattgatcctaaggaattgattcgtgtacgt
gatgcattgactactgaaaaatacattctaagcgaaattcaaaaagcttatagaatgcag
ggtgtagaaattgccgataagcacgttgaagttatggcacgtcaaatgcttcaaaaggtt
cgtattcttgatccaggtgaaactgatatcttaccaggtgaattgatggatattggtgaa
tttaaggcaagaaaccgtgaggtaattatttctggtggtattcctgcaactgcacaaagt
gtaattcttggtattaccaaggccgctcttgaaactaacagtttcttgtctgcagcttca
ttccaggaaactactcgtgttcttactgatgcttctattcgtggaaagaacgatccatta
cttggtcttaaggaaaatgttatcattggtaagattattcctgctggtactggtatgcct
gtttaccgcgaaatggaacctaaggttgacattcctgaagatgaaaagaaaaagtcagtt
tattctatagctgatattgaaaaaaaattagctgcagctgatgcagaaaagaacgatggc
tcagctgactaa
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