Lactobacillus paragasseri: LpgJCM5343_04170
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Entry
LpgJCM5343_04170 CDS
T05840
Symbol
deaD
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lpw
Lactobacillus paragasseri
Brite
KEGG Orthology (KO) [BR:
lpw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lpw03019
]
LpgJCM5343_04170 (deaD)
03009 Ribosome biogenesis [BR:
lpw03009
]
LpgJCM5343_04170 (deaD)
Enzymes [BR:
lpw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LpgJCM5343_04170 (deaD)
Messenger RNA biogenesis [BR:
lpw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LpgJCM5343_04170 (deaD)
Ribosome biogenesis [BR:
lpw03009
]
Prokaryotic type
rRNA helicases
LpgJCM5343_04170 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_19
AAA_30
MGS
Fe-ADH
Motif
Other DBs
NCBI-ProteinID:
BBD48064
LinkDB
All DBs
Position
445728..447113
Genome browser
AA seq
461 aa
AA seq
DB search
MAQTNSIFQSEKIRPELRTGLEKINFSKPTKVQAAVIPALLNNKNVVVQAATGSGKTHAY
LLPLLNMIDENAPVTQAVVTAPSRELANQLYKVARQLRDASGLNISIEYLGGGNDRNRQI
EKAENRAPQLIIATPGRLHDFASKKVINLDNVKAFIIDEADMTLDMGFLGQMDEIISKLD
KKVILGAFSATIPVKLENFLRKYMSKPDFIVIDNPAIIAPTIQNDLIDVGSRDKKEILYK
LLTMGQPYLALVFANTKKTVDELTDYLEEQGLKVAKIHGGITERERKRIIRQVREGQYQY
VVASDLAARGIDVPGVSLVVNYEIPKDLEFVIHRIGRTGRNGLKGHAITLIYDEEMPQIE
DLEKLGIHFDFKEIKNGELVERTHYHRRDNRQARSHKLDNRMIGMVKKTKKKVKPGYKKK
IKQAIQKDRQQKRKIEERHQIRKAKRRRKREREQARENFDN
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaacaaatagtatatttcaaagtgaaaagattagaccagaattacgaactggt
ctagaaaaaattaactttagtaaacccactaaggttcaagctgcagttattccggctctt
ttaaataataaaaacgtcgtagttcaagcagctactggttcaggtaagactcatgcctac
ctgcttccacttttgaacatgattgatgaaaatgccccagtaacgcaagctgtagtaacc
gcgcctagtcgtgaattagcaaatcaattgtataaagtagcgcgtcaattaagggatgcg
agtggtctaaatatttcaattgaatatttaggtggtggcaatgaccggaatcgccaaatt
gaaaaagctgaaaatagggctccacaattaattattgctactcctggtcgtttacatgac
tttgcatcaaagaaagttattaatttagataacgtcaaagcctttatcattgatgaagca
gacatgacacttgatatgggctttttagggcaaatggatgagattatctctaagttagat
aaaaaagtcattttaggtgctttttcagcaactatcccagttaagctagaaaatttctta
aggaagtatatgtcaaaaccagactttatcgttattgataatccggcaattattgctcca
acaattcaaaatgacttaattgatgttggttcaagagataaaaaagaaattttatataag
ctcttaacaatgggacaaccatatttggccttagtttttgctaatactaaaaagactgtt
gatgaattaactgattatcttgaagagcaaggacttaaggtggctaagatccatggcgga
attactgaacgtgagcgcaagcgtataattcgccaagttagagaaggtcagtaccagtat
gttgtagctagcgatttagctgctagaggaattgacgtacctggcgttagtttagtggtt
aactatgagattcctaaggatcttgaatttgttattcaccgaattggtagaactggtcga
aatggccttaaaggtcacgcaattaccttgatctatgatgaggaaatgccacaaattgaa
gacttagaaaaattaggtattcactttgactttaaagaaattaaaaatggtgaattagtt
gaaagaacacactaccatcgtcgtgacaatcgtcaagctcgcagtcacaagcttgataat
cgcatgattggaatggttaagaagactaagaaaaaagtaaagcccggttataagaagaaa
attaagcaagccattcaaaaagaccgccagcaaaagcgtaaaatcgaagagcgtcatcaa
attagaaaagctaaacgtagacgtaagcgtgagcgcgaacaagcacgcgaaaattttgac
aactag
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