Lactobacillus paragasseri: LpgJCM5343_05070
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Entry
LpgJCM5343_05070 CDS
T05840
Name
(GenBank) rhamnogalacturonate lyase precursor
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
lpw
Lactobacillus paragasseri
Brite
KEGG Orthology (KO) [BR:
lpw00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
LpgJCM5343_05070
Enzymes [BR:
lpw01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
LpgJCM5343_05070
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GFIT
Motif
Pfam:
CBM-like
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
SpaA
Ig_DR_A0283-like
Motif
Other DBs
NCBI-ProteinID:
BBD48154
LinkDB
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Position
546032..547723
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AA seq
563 aa
AA seq
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MLSKLKDHIEDSNKELSLSNNEVQITFTKQGYVTKLLYKGKNVLEDLAGEPHDRDKNYSF
YCDYHMDGKTRHMHIDQTKTIENNDQMIHVAFIDSKSELGIEYHIILKNNDSGIYSYVKA
WNNTDHPLKVNELRTVYRFNQGLFNWSTNGVRFGRQPSSKEMLRGKKFQDETYRMKRGAL
FSNSQIYSKYDYAGYYKDTDFWGQAGNNFGAWLITPNKSFYGSGPLNQDLMIHYDGLILN
YLFSEHFGKGLNVLPTDFKKMYGPWCLYLNNGSFEDVVKRSKKEKQAWPYSWLDDLDYPL
ELSDVVGQISSAVSKKYEIILISNTKDKKTFIEQQNSNTYYVETDKNGKFSLKNIRPDSY
SLYAYALDGTDLDEHLLIKDISINQRKIDLGEFEIHPSTKSIWQIGYPSHTTDGFKYSDQ
LRNYVWQELVPNNLTYRIDKNDDWYYLQNDSGKWNIEFSSNNLSNKNLLLKVALAGATQK
QMDQGNGVLININLNGKKIFSERFENDRAAYRSALKSGRYHLIIVLITYNQLKQNQVNTI
SFTTDGYLMYDAIQLGEECKSNE
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgttatctaaattaaaagaccacatagaagatagtaataaagaattatctttaagcaat
aatgaagtacaaataactttcactaaacaaggctatgtcacaaagctactgtataaagga
aaaaatgtcttagaagacttagcaggtgaacctcatgatcgcgataaaaattatagtttc
tattgcgattatcatatggatggaaaaacaagacatatgcatattgatcaaacaaaaact
attgaaaataatgatcagatgattcatgtggcgtttattgattcaaaaagtgaacttgga
attgaatatcatattattttgaaaaataacgattctggcatttattcgtatgttaaggca
tggaacaatactgatcatcccttgaaagtaaatgaattaagaactgtttatcgttttaat
caaggcttgtttaattggagtactaatggagttcgattcggcagacaaccttcatcaaag
gaaatgctgagaggtaaaaaattccaagatgaaacttataggatgaagcggggagcttta
ttttcaaacagtcagatttattccaaatatgattatgctggttactataaagatacagat
ttctggggacaagcaggaaataattttggtgcatggctaattacaccaaataaatctttt
tatggttcaggcccgttaaatcaagatcttatgattcattatgatggattaatcttgaat
tacttatttagtgaacattttggtaagggactgaatgttctgccaactgactttaagaaa
atgtatggaccatggtgtctctatttaaataatggctcatttgaagatgtagtaaaaaga
agcaagaaagaaaaacaggcttggccatattcctggttggatgatctagattatccgtta
gagttaagcgatgttgttggtcagattagttcagctgtttctaaaaaatatgaaattatt
ttgattagtaatactaaggataaaaagacatttatcgagcaacaaaattctaatacctat
tacgttgagacagataaaaatggaaaatttagtttaaaaaatattcgaccagatagctat
tccttatatgcttacgctttagatggtacagatcttgatgaacatttattgataaaagat
atttcaatcaatcaaagaaagattgatttaggagaatttgaaattcatccatctacaaaa
tctatttggcaaattggttatccttcacacacaaccgatggatttaagtatagtgatcag
ctacgtaattatgtttggcaagaattagtgcctaacaatttaacatatcggattgataaa
aatgatgactggtattatctccaaaatgatagtgggaaatggaatattgaattttcttct
aataatttatctaataaaaatttattacttaaggttgcgttagcaggagcaacgcaaaaa
caaatggatcaaggaaatggggtcctgattaatatcaatttaaatggaaaaaagattttt
tctgaaagatttgaaaatgatcgggctgcatatcgttcagccttaaagagtggaagatat
catctgataatagtgctgattacttataatcaactaaagcaaaatcaagttaatactatt
agttttactactgatggatatttaatgtatgacgcaatccagttaggagaggagtgtaaa
agcaatgaataa
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