Lactobacillus paragasseri: LpgJCM5343_07700
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Entry
LpgJCM5343_07700 CDS
T05840
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
lpw
Lactobacillus paragasseri
Brite
KEGG Orthology (KO) [BR:
lpw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lpw03016
]
LpgJCM5343_07700 (truB)
Enzymes [BR:
lpw01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
LpgJCM5343_07700 (truB)
Transfer RNA biogenesis [BR:
lpw03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
LpgJCM5343_07700 (truB)
Prokaryotic type
LpgJCM5343_07700 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-ProteinID:
BBD48417
LinkDB
All DBs
Position
792530..793423
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AA seq
297 aa
AA seq
DB search
MLNGIVVVNKPRGVTSSDCVYKLRKILQIRNIGHAGTLDPEVNGVLPIAIGQATKLIELM
HEKPKSYIGSGMFGRSTDSYDLDGKTIAEEKINTPFTKSEIIAGMKQLTGKLEQVPPIYS
AVRVNGKRLYEYARENIPVERPKRKVNVYSYELTKDPEYDPLEKTESFDFAIRCSKGTYV
RSLVNDLGEKLGVPAVMTSLTRTSSSGYDLNQAVDLETIEAEVDTPEKWLQPIDSFFAEL
PQLQLSPDQFKRVSNGASINLNTSYAKVALVYNGHIKAIYQRQGKIYRPEMMLLKNE
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgctgaatggaattgtagtagtaaataagccacgtggggtaacaagcagtgattgtgtt
tataagttaagaaagatacttcaaattagaaatattggacatgcaggcacgcttgatcct
gaagtaaatggcgtattaccaattgctattggacaagccacgaaattgatcgaattgatg
catgaaaagcccaaatcttatattggaagtggaatgtttggacggtcaactgatagctat
gatttagatggtaaaactattgctgaagaaaaaataaatacaccatttacaaaaagtgag
attattgctggaatgaagcagttaacaggaaaacttgaacaggtccctccaatttattca
gctgtaagagtaaatggtaaaagactttatgaatatgctcgagaaaatattccagttgaa
cgtcccaagagaaaagtcaatgtttatagttatgaattaacaaaagatcctgagtacgat
ccactggaaaaaacggaaagctttgattttgcaattcgttgctctaaaggaacctatgtc
aggtcattagtaaatgatctgggtgaaaagttaggtgttcctgctgtaatgactagtctt
acccgaactagtagttcaggctatgacttaaatcaagctgtagatttagaaacaattgaa
gcagaagtagatactcctgaaaaatggcttcagccaattgatagtttttttgctgaatta
cctcaacttcaactttcgccggatcaatttaagcgggtctcaaacggtgcaagtatcaat
ttaaataccagttatgctaaggtcgctttggtttataatggtcatataaaagctatttat
cagcgacaaggaaaaatctatcgccctgagatgatgcttttaaaaaatgaatag
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